The 2.0 version of rSNPBase

Variant report

Variant rs12972949
Chromosome Location chr19:41774935-41774936
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:127 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr19:41772800-41794400 Strong transcription iPS-18 Cell Line embryonic stem cell
2 chr19:41773000-41776800 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
3 chr19:41773000-41777400 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
4 chr19:41773000-41802400 Strong transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
5 chr19:41773000-41804000 Strong transcription Monocytes-CD14+_RO01746 blood
6 chr19:41773200-41775000 Weak transcription Ovary ovary
7 chr19:41773200-41776000 Strong transcription Primary monocytes fromperipheralblood blood
8 chr19:41773200-41794400 Strong transcription iPS-20b Cell Line embryonic stem cell
9 chr19:41773200-41794600 Strong transcription HUES48 Cell Line embryonic stem cell
10 chr19:41773200-41802200 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
11 chr19:41773200-41814400 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
12 chr19:41773400-41775400 Weak transcription Pancreatic Islets Pancreatic Islet
13 chr19:41773400-41783000 Strong transcription Fetal Kidney kidney
14 chr19:41773400-41788000 Strong transcription Brain Cingulate Gyrus brain
15 chr19:41773400-41788400 Strong transcription Primary hematopoietic stem cells blood
16 chr19:41773400-41788600 Strong transcription ES-I3 Cell Line embryonic stem cell
17 chr19:41773400-41792600 Strong transcription iPS-15b Cell Line embryonic stem cell
18 chr19:41773400-41793200 Strong transcription Brain Anterior Caudate brain
19 chr19:41773400-41794400 Strong transcription HUES6 Cell Line embryonic stem cell
20 chr19:41773400-41794600 Strong transcription HUES64 Cell Line embryonic stem cell
21 chr19:41773400-41802200 Strong transcription Primary T regulatory cells fromperipheralblood blood
22 chr19:41773400-41802200 Strong transcription Rectal Mucosa Donor 31 rectum
23 chr19:41773600-41775000 Genic enhancers Primary T killer naive cells fromperipheralblood blood
24 chr19:41773600-41777000 Weak transcription Psoas Muscle Psoas
25 chr19:41773600-41788000 Strong transcription Brain Inferior Temporal Lobe brain
26 chr19:41773600-41788400 Strong transcription Esophagus oesophagus
27 chr19:41773600-41792600 Strong transcription Rectal Smooth Muscle rectum
28 chr19:41773600-41792800 Strong transcription Colonic Mucosa Colon
29 chr19:41773600-41793400 Strong transcription K562 blood
30 chr19:41773600-41793400 Strong transcription NH-A brain
31 chr19:41773600-41793600 Strong transcription H1 Cell Line embryonic stem cell
32 chr19:41773600-41801400 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
33 chr19:41773600-41801800 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
34 chr19:41773600-41802200 Strong transcription Primary hematopoietic stem cells short term culture blood
35 chr19:41773600-41802200 Strong transcription Foreskin Fibroblast Primary Cells skin02 Skin
36 chr19:41773600-41802200 Strong transcription Placenta Placenta
37 chr19:41773600-41802200 Strong transcription HSMM muscle
38 chr19:41773600-41802800 Weak transcription Right Atrium heart
39 chr19:41773600-41803400 Strong transcription Sigmoid Colon Sigmoid Colon
40 chr19:41773600-41804400 Strong transcription Thymus Thymus
41 chr19:41773600-41812600 Strong transcription A549 lung
42 chr19:41773800-41775200 Genic enhancers Primary T killer memory cells from peripheral blood blood
43 chr19:41773800-41775200 Strong transcription Fetal Adrenal Gland Adrenal Gland
44 chr19:41773800-41775400 Weak transcription Aorta Aorta
45 chr19:41773800-41776000 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
46 chr19:41773800-41776800 Weak transcription Fetal Heart heart
47 chr19:41773800-41777400 Strong transcription HUVEC blood vessel
48 chr19:41773800-41781200 Strong transcription Primary neutrophils fromperipheralblood blood
49 chr19:41773800-41787800 Strong transcription Fetal Lung lung
50 chr19:41773800-41788000 Strong transcription Muscle Satellite Cultured Cells --

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Last update: Aug 31, 2015