Variant report

Variant	rs12977563
Chromosome Location	chr19:41756503-41756504
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr19:41754992..41757426-chr19:41761264..41763362,2	MCF-7	breast:
2	chr19:41743047..41745735-chr19:41754971..41757582,2	K562	blood:
3	chr19:41755140..41756874-chr19:41768060..41770333,2	MCF-7	breast:
4	chr19:41748141..41750709-chr19:41755527..41757688,2	K562	blood:
5	chr19:41731239..41733733-chr19:41753388..41756515,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000105323	Chromatin interaction
ENSG00000167601	Chromatin interaction

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs10410836	0.81[EUR][1000 genomes]
rs10421990	0.81[EUR][1000 genomes]
rs1056854	0.80[EUR][1000 genomes]
rs11879429	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11879435	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11879562	0.81[EUR][1000 genomes]
rs11880564	0.85[ASN][1000 genomes]
rs11880729	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11881940	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11881953	0.88[ASN][1000 genomes]
rs12327659	0.81[EUR][1000 genomes]
rs12972266	0.88[ASN][1000 genomes]
rs12972779	0.87[ASN][1000 genomes]
rs12972949	0.95[ASN][1000 genomes]
rs12974323	0.81[EUR][1000 genomes]
rs12974420	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12976536	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12980267	0.97[ASN][1000 genomes]
rs12980480	0.81[EUR][1000 genomes]
rs12980942	0.87[ASN][1000 genomes]
rs12981053	0.87[ASN][1000 genomes]
rs12982872	0.86[ASN][1000 genomes]
rs12983027	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12983339	0.93[ASN][1000 genomes]
rs12984160	0.87[ASN][1000 genomes]
rs12985162	0.83[ASN][1000 genomes]
rs12985339	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1946612	0.94[ASN][1000 genomes]
rs1946613	0.83[AFR][1000 genomes];0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2053086	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2241718	0.85[ASN][1000 genomes]
rs2241719	0.85[ASN][1000 genomes]
rs2241720	0.85[ASN][1000 genomes]
rs2304230	0.81[EUR][1000 genomes]
rs2304231	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2304232	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2304235	0.85[ASN][1000 genomes]
rs34322801	0.85[ASN][1000 genomes]
rs34772093	0.94[ASN][1000 genomes]
rs35310790	0.86[ASN][1000 genomes]
rs35501756	0.85[ASN][1000 genomes]
rs35546772	0.95[ASN][1000 genomes]
rs35812313	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3745295	0.81[EUR][1000 genomes]
rs3752705	0.81[EUR][1000 genomes]
rs3760659	0.94[ASN][1000 genomes]
rs3760660	0.83[AFR][1000 genomes];0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3786556	0.85[ASN][1000 genomes]
rs3816052	0.81[EUR][1000 genomes]
rs4591267	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61459202	0.87[ASN][1000 genomes]
rs66724427	0.81[EUR][1000 genomes]
rs67744888	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7248164	0.81[EUR][1000 genomes]
rs7250883	0.97[ASN][1000 genomes]
rs7256416	0.81[EUR][1000 genomes]
rs7256856	0.81[EUR][1000 genomes]
rs7256873	0.84[ASN][1000 genomes]
rs7257825	0.81[EUR][1000 genomes]
rs7258749	0.81[EUR][1000 genomes]
rs8103839	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8105901	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]

No data

Chromatin state (count:92 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:41730200-41762600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr19:41732600-41768800	Weak transcription	Small Intestine	intestine
3	chr19:41733200-41767200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr19:41733200-41767200	Strong transcription	Muscle Satellite Cultured Cells	--
5	chr19:41736000-41767200	Strong transcription	Osteobl	bone
6	chr19:41736000-41767400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr19:41736200-41757000	Strong transcription	NH-A	brain
8	chr19:41736400-41767800	Strong transcription	Placenta Amnion	Placenta Amnion
9	chr19:41736600-41757200	Strong transcription	NHLF	lung
10	chr19:41736600-41766200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr19:41736600-41766600	Strong transcription	Fetal Stomach	stomach
12	chr19:41736600-41767000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr19:41736600-41767200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr19:41736600-41767400	Strong transcription	HSMM	muscle
15	chr19:41736600-41767800	Weak transcription	Brain Angular Gyrus	brain
16	chr19:41736800-41758200	Strong transcription	Fetal Muscle Leg	muscle
17	chr19:41736800-41762400	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr19:41737200-41766000	Strong transcription	Stomach Smooth Muscle	stomach
19	chr19:41737400-41766600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
20	chr19:41738000-41761000	Strong transcription	Colon Smooth Muscle	Colon
21	chr19:41738800-41767400	Weak transcription	Fetal Brain Male	brain
22	chr19:41739400-41758200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
23	chr19:41739400-41767400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr19:41739800-41766200	Strong transcription	HUES64 Cell Line	embryonic stem cell
25	chr19:41742600-41767600	Strong transcription	A549	lung
26	chr19:41742800-41757000	Strong transcription	HSMMtube	muscle
27	chr19:41742800-41757200	Strong transcription	Ovary	ovary
28	chr19:41743000-41757000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr19:41743400-41757200	Strong transcription	HUVEC	blood vessel
30	chr19:41743600-41758400	Strong transcription	Fetal Muscle Trunk	muscle
31	chr19:41743800-41761200	Strong transcription	H1 Cell Line	embryonic stem cell
32	chr19:41745200-41765000	Weak transcription	Fetal Brain Female	brain
33	chr19:41745600-41756600	Weak transcription	Stomach Mucosa	stomach
34	chr19:41745600-41760600	Strong transcription	HUES48 Cell Line	embryonic stem cell
35	chr19:41745800-41758200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr19:41745800-41762200	Weak transcription	Rectal Mucosa Donor 31	rectum
37	chr19:41745800-41767200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr19:41746400-41756800	Strong transcription	ES-I3 Cell Line	embryonic stem cell
39	chr19:41746800-41758200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr19:41749600-41758200	Weak transcription	Right Ventricle	heart
41	chr19:41749600-41758400	Weak transcription	Spleen	Spleen
42	chr19:41753200-41757200	Strong transcription	Aorta	Aorta
43	chr19:41753400-41767000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr19:41753800-41759800	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
45	chr19:41753800-41767400	Strong transcription	NHDF-Ad	bronchial
46	chr19:41754000-41756800	Strong transcription	Colonic Mucosa	Colon
47	chr19:41754000-41757000	Strong transcription	Adipose Nuclei	Adipose
48	chr19:41754000-41757200	Strong transcription	Duodenum Smooth Muscle	Duodenum
49	chr19:41754000-41757400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
50	chr19:41754200-41756600	Strong transcription	Fetal Intestine Large	intestine

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