The 2.0 version of rSNPBase

Variant report

Variant rs12981053
Chromosome Location chr19:41832456-41832457
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:124 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr19:41818600-41854800 Strong transcription Dnd41 blood
2 chr19:41824400-41834000 Transcr. at gene 5' and 3' Foreskin Fibroblast Primary Cells skin02 Skin
3 chr19:41827000-41832800 Genic enhancers Primary T cells fromperipheralblood blood
4 chr19:41827400-41833000 Enhancers Primary hematopoietic stem cells blood
5 chr19:41827400-41833000 Genic enhancers Fetal Thymus thymus
6 chr19:41828600-41834000 Enhancers Placenta Amnion Placenta Amnion
7 chr19:41828800-41834000 Flanking Active TSS Primary hematopoietic stem cells G-CSF-mobilized Male --
8 chr19:41828800-41834400 Flanking Active TSS Primary hematopoietic stem cells G-CSF-mobilized Female --
9 chr19:41829200-41835400 Flanking Active TSS Monocytes-CD14+_RO01746 blood
10 chr19:41829600-41833000 Enhancers Primary monocytes fromperipheralblood blood
11 chr19:41830000-41832600 Flanking Active TSS Foreskin Fibroblast Primary Cells skin01 Skin
12 chr19:41830000-41833000 Enhancers Primary T killer naive cells fromperipheralblood blood
13 chr19:41830000-41833400 Enhancers H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
14 chr19:41830200-41833200 Enhancers HMEC breast
15 chr19:41830400-41834000 Enhancers Fetal Lung lung
16 chr19:41830600-41832600 Flanking Active TSS Stomach Smooth Muscle stomach
17 chr19:41830600-41833000 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
18 chr19:41830800-41832600 Flanking Active TSS Duodenum Smooth Muscle Duodenum
19 chr19:41830800-41834600 Flanking Active TSS Skeletal Muscle Female skeletal muscle
20 chr19:41830800-41835000 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
21 chr19:41831200-41833000 Flanking Active TSS Muscle Satellite Cultured Cells --
22 chr19:41831200-41833000 Weak transcription Thymus Thymus
23 chr19:41831600-41832600 Transcr. at gene 5' and 3' Primary hematopoietic stem cells short term culture blood
24 chr19:41831600-41832600 Flanking Active TSS Brain Inferior Temporal Lobe brain
25 chr19:41831600-41832800 Enhancers Primary T killer memory cells from peripheral blood blood
26 chr19:41831600-41834000 Genic enhancers Primary T cells from cord blood blood
27 chr19:41831600-41835200 Enhancers Sigmoid Colon Sigmoid Colon
28 chr19:41831600-41835400 Flanking Active TSS Primary neutrophils fromperipheralblood blood
29 chr19:41831800-41832600 Flanking Active TSS Breast Myoepithelial Primary Cells Breast
30 chr19:41831800-41832600 Enhancers Primary T helper cells PMA-I stimulated --
31 chr19:41831800-41832600 Flanking Active TSS Rectal Smooth Muscle rectum
32 chr19:41831800-41833000 Enhancers Primary T helper cells fromperipheralblood blood
33 chr19:41831800-41833800 Flanking Active TSS HUES6 Cell Line embryonic stem cell
34 chr19:41831800-41834600 Enhancers Fetal Heart heart
35 chr19:41831800-41835200 Genic enhancers Spleen Spleen
36 chr19:41832000-41832600 Flanking Active TSS ES-I3 Cell Line embryonic stem cell
37 chr19:41832000-41832600 Bivalent Enhancer Foreskin Melanocyte Primary Cells skin03 Skin
38 chr19:41832000-41832600 Enhancers Aorta Aorta
39 chr19:41832000-41832600 Flanking Bivalent TSS/Enh Duodenum Mucosa Duodenum
40 chr19:41832000-41832600 Genic enhancers Right Atrium heart
41 chr19:41832000-41833000 Enhancers Primary T helper memory cells from peripheral blood 2 blood
42 chr19:41832000-41833000 Enhancers Primary T helper naive cells fromperipheralblood blood
43 chr19:41832000-41833200 Flanking Active TSS Brain Anterior Caudate brain
44 chr19:41832000-41833200 Bivalent Enhancer Fetal Intestine Large intestine
45 chr19:41832000-41833400 Enhancers ES-UCSF4 Cell Line embryonic stem cell
46 chr19:41832000-41833800 Enhancers hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
47 chr19:41832000-41834000 Flanking Active TSS Primary Natural Killer cells fromperipheralblood blood
48 chr19:41832000-41834200 Flanking Active TSS Primary B cells from peripheral blood blood
49 chr19:41832000-41835200 Genic enhancers IMR90 fetal lung fibroblasts Cell Line lung
50 chr19:41832200-41832600 Bivalent Enhancer H1 Cell Line embryonic stem cell

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Last update: Aug 31, 2015