The 2.0 version of rSNPBase

Variant report

Variant rs11466347
Chromosome Location chr19:41841098-41841099
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:106 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr19:41818600-41854800 Strong transcription Dnd41 blood
2 chr19:41832400-41856000 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
3 chr19:41833400-41846400 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
4 chr19:41834200-41842000 Genic enhancers Placenta Placenta
5 chr19:41834200-41842600 Genic enhancers Primary Natural Killer cells fromperipheralblood blood
6 chr19:41834200-41856600 Weak transcription Brain Anterior Caudate brain
7 chr19:41834200-41856800 Weak transcription Fetal Kidney kidney
8 chr19:41834400-41854800 Weak transcription Small Intestine intestine
9 chr19:41834600-41842600 Strong transcription Thymus Thymus
10 chr19:41834800-41841400 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
11 chr19:41834800-41845200 Weak transcription Rectal Smooth Muscle rectum
12 chr19:41834800-41845600 Strong transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
13 chr19:41834800-41847600 Weak transcription Brain Hippocampus Middle brain
14 chr19:41834800-41849400 Weak transcription Fetal Lung lung
15 chr19:41834800-41855600 Strong transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
16 chr19:41834800-41856800 Weak transcription Brain Cingulate Gyrus brain
17 chr19:41834800-41856800 Weak transcription Brain Substantia Nigra brain
18 chr19:41835000-41841600 Genic enhancers Primary T helper cells PMA-I stimulated --
19 chr19:41835000-41843400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
20 chr19:41835000-41845200 Strong transcription H1 Derived Mesenchymal Stem Cells ES cell derived
21 chr19:41835000-41845600 Weak transcription HSMM muscle
22 chr19:41835000-41847600 Weak transcription Gastric stomach
23 chr19:41835000-41847800 Weak transcription Pancreas Pancrea
24 chr19:41835000-41854400 Strong transcription Fetal Stomach stomach
25 chr19:41835000-41856600 Weak transcription Brain Inferior Temporal Lobe brain
26 chr19:41835000-41856800 Weak transcription Brain Angular Gyrus brain
27 chr19:41835200-41843600 Weak transcription NH-A brain
28 chr19:41835200-41846600 Weak transcription HMEC breast
29 chr19:41835200-41849400 Weak transcription Rectal Mucosa Donor 31 rectum
30 chr19:41835400-41841200 Weak transcription Rectal Mucosa Donor 29 rectum
31 chr19:41835400-41845800 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
32 chr19:41835400-41847600 Weak transcription Colonic Mucosa Colon
33 chr19:41835400-41847800 Weak transcription Cortex derived primary cultured neurospheres brain
34 chr19:41835600-41856000 Strong transcription IMR90 fetal lung fibroblasts Cell Line lung
35 chr19:41836000-41855200 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
36 chr19:41836200-41845200 Strong transcription Osteobl bone
37 chr19:41836800-41841400 Strong transcription Fetal Thymus thymus
38 chr19:41836800-41843000 Strong transcription Primary T cells from cord blood blood
39 chr19:41837200-41847600 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
40 chr19:41837200-41847600 Strong transcription Primary mononuclear cells fromperipheralblood Blood
41 chr19:41837200-41850200 Weak transcription Breast Myoepithelial Primary Cells Breast
42 chr19:41837400-41847600 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
43 chr19:41837400-41847600 Weak transcription Skeletal Muscle Female skeletal muscle
44 chr19:41837600-41841800 Genic enhancers Primary T helper memory cells from peripheral blood 2 blood
45 chr19:41837800-41850200 Weak transcription iPS-15b Cell Line embryonic stem cell
46 chr19:41837800-41855800 Weak transcription HUES64 Cell Line embryonic stem cell
47 chr19:41838200-41845000 Weak transcription Colon Smooth Muscle Colon
48 chr19:41838200-41847600 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
49 chr19:41838200-41847600 Weak transcription Right Ventricle heart
50 chr19:41838200-41847800 Weak transcription Stomach Mucosa stomach

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Last update: Aug 31, 2015