Variant report

Variant	rs35546772
Chromosome Location	chr19:41764758-41764759
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr19:41764667-41765182	U87	brain:	n/a	n/a
2	MAX	chr19:41764737-41765063	K562	blood:	n/a	n/a
3	POLR2A	chr19:41764508-41765578	U87	brain:	n/a	n/a
4	POLR2A	chr19:41764588-41765522	U87	brain:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:41762234..41765472-chr19:41769358..41771967,3	MCF-7	breast:

Variant related genes	Relation type
HNRNPUL1	TF binding region
ENSG00000105323	Chromatin interaction

rs_ID	r²[population]
rs11879429	0.95[ASN][1000 genomes]
rs11879435	0.95[ASN][1000 genomes]
rs11880729	0.95[ASN][1000 genomes]
rs11881940	0.83[ASN][1000 genomes]
rs11881953	0.83[ASN][1000 genomes]
rs12972266	0.83[ASN][1000 genomes]
rs12972779	0.92[ASN][1000 genomes]
rs12972949	0.90[ASN][1000 genomes]
rs12974420	0.83[ASN][1000 genomes]
rs12976536	0.83[ASN][1000 genomes]
rs12977563	0.95[ASN][1000 genomes]
rs12980267	0.92[ASN][1000 genomes]
rs12980942	0.82[ASN][1000 genomes]
rs12981053	0.82[ASN][1000 genomes]
rs12982872	0.91[ASN][1000 genomes]
rs12983027	0.93[ASN][1000 genomes]
rs12983339	0.88[ASN][1000 genomes]
rs12984160	0.82[ASN][1000 genomes]
rs12985339	0.83[ASN][1000 genomes]
rs1946612	0.89[ASN][1000 genomes]
rs1946613	0.91[ASN][1000 genomes]
rs2053086	0.83[ASN][1000 genomes]
rs2304231	0.95[ASN][1000 genomes]
rs2304232	0.95[ASN][1000 genomes]
rs2304235	0.90[ASN][1000 genomes]
rs34772093	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35310790	0.81[ASN][1000 genomes]
rs35812313	0.90[ASN][1000 genomes]
rs3760659	0.89[ASN][1000 genomes]
rs3760660	0.91[ASN][1000 genomes]
rs3786556	0.90[ASN][1000 genomes]
rs4591267	0.95[ASN][1000 genomes]
rs61459202	0.82[ASN][1000 genomes]
rs66841352	0.81[ASN][1000 genomes]
rs67744888	0.90[ASN][1000 genomes]
rs7250883	0.92[ASN][1000 genomes]
rs7256873	0.89[ASN][1000 genomes]
rs8103839	0.89[ASN][1000 genomes]
rs8105901	0.88[ASN][1000 genomes]

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:41732600-41768800	Weak transcription	Small Intestine	intestine
2	chr19:41733200-41767200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr19:41733200-41767200	Strong transcription	Muscle Satellite Cultured Cells	--
4	chr19:41736000-41767200	Strong transcription	Osteobl	bone
5	chr19:41736000-41767400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr19:41736400-41767800	Strong transcription	Placenta Amnion	Placenta Amnion
7	chr19:41736600-41766200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr19:41736600-41766600	Strong transcription	Fetal Stomach	stomach
9	chr19:41736600-41767000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr19:41736600-41767200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr19:41736600-41767400	Strong transcription	HSMM	muscle
12	chr19:41736600-41767800	Weak transcription	Brain Angular Gyrus	brain
13	chr19:41737200-41766000	Strong transcription	Stomach Smooth Muscle	stomach
14	chr19:41737400-41766600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
15	chr19:41738800-41767400	Weak transcription	Fetal Brain Male	brain
16	chr19:41739400-41767400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr19:41739800-41766200	Strong transcription	HUES64 Cell Line	embryonic stem cell
18	chr19:41742600-41767600	Strong transcription	A549	lung
19	chr19:41745200-41765000	Weak transcription	Fetal Brain Female	brain
20	chr19:41745800-41767200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr19:41753400-41767000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr19:41753800-41767400	Strong transcription	NHDF-Ad	bronchial
23	chr19:41754200-41766000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr19:41754200-41766000	Strong transcription	NHEK	skin
25	chr19:41754200-41767200	Strong transcription	HUES6 Cell Line	embryonic stem cell
26	chr19:41754600-41767200	Weak transcription	Brain Germinal Matrix	brain
27	chr19:41755000-41767400	Weak transcription	Fetal Thymus	thymus
28	chr19:41755000-41767800	Weak transcription	Hela-S3	cervix
29	chr19:41755000-41768000	Weak transcription	Gastric	stomach
30	chr19:41757200-41766200	Strong transcription	ES-I3 Cell Line	embryonic stem cell
31	chr19:41757400-41767800	Weak transcription	Right Atrium	heart
32	chr19:41758000-41766000	Strong transcription	Ovary	ovary
33	chr19:41758000-41766000	Strong transcription	HMEC	breast
34	chr19:41758000-41766200	Strong transcription	Duodenum Smooth Muscle	Duodenum
35	chr19:41758000-41766200	Strong transcription	HSMMtube	muscle
36	chr19:41758000-41767400	Strong transcription	NHLF	lung
37	chr19:41758200-41767400	Strong transcription	NH-A	brain
38	chr19:41758600-41765800	Strong transcription	HUVEC	blood vessel
39	chr19:41758600-41766200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
40	chr19:41758600-41768000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr19:41758800-41766000	Strong transcription	Adipose Nuclei	Adipose
42	chr19:41758800-41766200	Strong transcription	Fetal Muscle Leg	muscle
43	chr19:41759000-41765400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
44	chr19:41759200-41766600	Strong transcription	Fetal Muscle Trunk	muscle
45	chr19:41760000-41767400	Weak transcription	Pancreas	Pancrea
46	chr19:41760200-41767400	Weak transcription	Colonic Mucosa	Colon
47	chr19:41760800-41766000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
48	chr19:41760800-41767600	Weak transcription	HepG2	liver
49	chr19:41761600-41766000	Strong transcription	Fetal Lung	lung
50	chr19:41761800-41765800	Strong transcription	Colon Smooth Muscle	Colon

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