Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:119682940..119684767-chr6:119691573..119693912,2	K562	blood:
2	chr6:119690139..119692932-chr6:119750069..119752418,2	K562	blood:

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs12664079	0.86[ASN][1000 genomes]
rs1295386	0.92[CEU][hapmap];0.80[ASN][1000 genomes]
rs1342316	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1797064	0.85[CHB][hapmap]
rs195046	0.81[CEU][hapmap]
rs195062	0.86[AMR][1000 genomes]
rs195079	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs195083	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs195091	0.81[CEU][hapmap]
rs2180040	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4946428	0.80[JPT][hapmap]
rs6569074	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6569075	0.82[ASN][1000 genomes]
rs6921356	0.90[ASN][1000 genomes]
rs7765368	0.84[CHB][hapmap]
rs7773367	0.90[ASN][1000 genomes]
rs9372527	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9372529	0.86[ASN][1000 genomes]
rs9374791	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9374801	0.80[JPT][hapmap]
rs9387646	0.80[ASN][1000 genomes]
rs9398510	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9401139	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025995	chr6:119407742-119709548	Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	esv3447598	chr6:119558591-120119384	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	esv3389526	chr6:119558598-120190087	ZNF genes & repeats Enhancers Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:119682000-119693200	Weak transcription	Left Ventricle	heart
2	chr6:119688800-119701400	Weak transcription	Primary B cells from cord blood	blood
3	chr6:119689000-119693400	Weak transcription	Primary hematopoietic stem cells	blood
4	chr6:119689200-119694600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr6:119689600-119720600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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