Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:119707465..119709117-chr6:119711572..119713986,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11153813	0.82[ASN][1000 genomes]
rs1295379	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1295390	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1298630	0.86[ASN][1000 genomes]
rs1342316	0.87[ASN][1000 genomes]
rs1797064	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2180040	0.81[ASN][1000 genomes]
rs4945636	0.90[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs4946409	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs56095132	0.82[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs6921356	0.80[ASN][1000 genomes]
rs6924723	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72952933	0.90[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs7765368	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7773367	0.80[ASN][1000 genomes]
rs9372527	0.85[ASN][1000 genomes]
rs9372528	0.90[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs9372529	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9372534	0.82[AFR][1000 genomes]
rs9374790	0.82[AFR][1000 genomes]
rs9374791	0.87[ASN][1000 genomes]
rs9387646	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9398508	0.90[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs9398509	0.90[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs9398510	0.81[ASN][1000 genomes]
rs9401139	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025995	chr6:119407742-119709548	Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	esv3447598	chr6:119558591-120119384	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	esv3389526	chr6:119558598-120190087	ZNF genes & repeats Enhancers Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:119689600-119720600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr6:119703000-119709400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr6:119705800-119708400	ZNF genes & repeats	Primary hematopoietic stem cells	blood

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