Variant report

Variant	rs11153813
Chromosome Location	chr6:119673333-119673334
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr6:119673292-119673581	K562	blood:	n/a	n/a

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:119672022..119674199-chr6:119758005..119760805,2	K562	blood:
2	chr6:119671918..119674788-chr6:119887253..119890815,3	K562	blood:
3	chr6:119671920..119673438-chr6:119680108..119682545,2	K562	blood:
4	chr6:119668881..119671932-chr6:119672214..119675857,4	MCF-7	breast:
5	chr6:119671974..119673513-chr6:122790759..122793728,2	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ASF1A-6	chr6:119671256-119673798	NONHSAT114714

No data

Variant related genes	Relation type
MAN1A1	TF binding region
ENSG00000111897	Chromatin interaction
ENSG00000135549	Chromatin interaction
ENSG00000111885	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs12664079	0.82[ASN][1000 genomes]
rs1295379	0.97[ASN][1000 genomes]
rs1295386	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1295390	0.97[ASN][1000 genomes]
rs1797064	0.98[ASN][1000 genomes]
rs195062	0.80[ASN][1000 genomes]
rs195063	0.89[ASN][1000 genomes]
rs195076	0.89[ASN][1000 genomes]
rs195078	0.80[ASN][1000 genomes]
rs195079	0.80[ASN][1000 genomes]
rs195081	0.89[ASN][1000 genomes]
rs195083	0.80[ASN][1000 genomes]
rs195085	0.84[ASN][1000 genomes]
rs195086	0.92[ASN][1000 genomes]
rs4946409	0.95[ASN][1000 genomes]
rs6569074	0.86[ASN][1000 genomes]
rs6569075	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6921356	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6924723	0.96[ASN][1000 genomes]
rs7765368	0.98[ASN][1000 genomes]
rs7773367	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9372529	0.82[ASN][1000 genomes]
rs9387646	0.93[ASN][1000 genomes]
rs9401139	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025995	chr6:119407742-119709548	Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	esv3447598	chr6:119558591-120119384	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	esv3389526	chr6:119558598-120190087	ZNF genes & repeats Enhancers Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
4	esv1802628	chr6:119647135-119678881	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:119671800-119673400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr6:119671800-119689200	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr6:119672000-119673400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
4	chr6:119672000-119674400	Weak transcription	Small Intestine	intestine
5	chr6:119672000-119674600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr6:119672000-119675000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr6:119672200-119673400	Weak transcription	Psoas Muscle	Psoas
8	chr6:119672200-119674400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr6:119672200-119674600	Weak transcription	Primary neutrophils fromperipheralblood	blood
10	chr6:119672200-119674600	Weak transcription	Colon Smooth Muscle	Colon
11	chr6:119672200-119675000	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr6:119672400-119674400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr6:119672400-119674400	Weak transcription	Primary monocytes fromperipheralblood	blood
14	chr6:119672400-119674400	Weak transcription	Brain Anterior Caudate	brain
15	chr6:119672400-119674400	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr6:119672400-119674600	Weak transcription	Primary B cells from peripheral blood	blood
17	chr6:119672400-119675600	Enhancers	Fetal Kidney	kidney
18	chr6:119672400-119675800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
19	chr6:119672400-119676200	Enhancers	Primary B cells from cord blood	blood
20	chr6:119672600-119673400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr6:119672600-119673600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr6:119672600-119674400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr6:119672600-119674400	Weak transcription	Monocytes-CD14+_RO01746	blood
24	chr6:119672800-119673400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr6:119672800-119673400	Flanking Active TSS	Primary hematopoietic stem cells	blood
26	chr6:119672800-119673400	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
27	chr6:119672800-119673400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr6:119672800-119673400	Enhancers	NHDF-Ad	bronchial
29	chr6:119672800-119673600	Enhancers	Fetal Intestine Large	intestine
30	chr6:119672800-119673600	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
31	chr6:119673000-119673400	Flanking Active TSS	Adipose Nuclei	Adipose
32	chr6:119673000-119673400	Flanking Bivalent TSS/Enh	Dnd41	blood
33	chr6:119673000-119673400	Flanking Active TSS	GM12878-XiMat	blood
34	chr6:119673000-119673400	Flanking Active TSS	K562	blood
35	chr6:119673000-119673600	Enhancers	Fetal Heart	heart
36	chr6:119673000-119673600	Enhancers	Fetal Intestine Small	intestine
37	chr6:119673200-119673800	Enhancers	HepG2	liver
38	chr6:119673200-119674200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr6:119673200-119674400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr6:119673200-119674400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
41	chr6:119673200-119674400	Weak transcription	Duodenum Mucosa	Duodenum
42	chr6:119673200-119674600	Weak transcription	Primary T helper cells PMA-I stimulated	--

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