Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:119669855..119672148-chr6:119684470..119687227,2	MCF-7	breast:
2	chr6:119670595..119672579-chr6:119686170..119689038,2	K562	blood:

Variant related genes	Relation type
ENSG00000111885	Chromatin interaction

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11153813	0.97[ASN][1000 genomes]
rs12664079	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1295386	0.85[ASN][1000 genomes]
rs1295390	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1797064	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs195062	0.80[ASN][1000 genomes]
rs195063	0.89[ASN][1000 genomes]
rs195076	0.89[ASN][1000 genomes]
rs195078	0.80[ASN][1000 genomes]
rs195079	0.80[ASN][1000 genomes]
rs195081	0.89[ASN][1000 genomes]
rs195083	0.80[ASN][1000 genomes]
rs195085	0.84[ASN][1000 genomes]
rs195086	0.92[ASN][1000 genomes]
rs4946409	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6569074	0.86[ASN][1000 genomes]
rs6569075	0.87[ASN][1000 genomes]
rs6921356	0.87[ASN][1000 genomes]
rs6924723	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7765368	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7773367	0.87[ASN][1000 genomes]
rs9372529	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9387646	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9401139	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025995	chr6:119407742-119709548	Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	esv3447598	chr6:119558591-120119384	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	esv3389526	chr6:119558598-120190087	ZNF genes & repeats Enhancers Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:119671800-119689200	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr6:119673400-119690000	Weak transcription	K562	blood
3	chr6:119673600-119687200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr6:119675200-119688800	Weak transcription	Brain Anterior Caudate	brain
5	chr6:119677000-119691800	Weak transcription	Adipose Nuclei	Adipose
6	chr6:119679400-119691600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr6:119681000-119690200	Weak transcription	Primary T cells from cord blood	blood
8	chr6:119682000-119693200	Weak transcription	Left Ventricle	heart
9	chr6:119684600-119688000	Weak transcription	Fetal Heart	heart
10	chr6:119685400-119688200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr6:119686200-119686800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr6:119686400-119687200	Weak transcription	Primary B cells from cord blood	blood
13	chr6:119686600-119689000	Strong transcription	Primary hematopoietic stem cells	blood

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