Variant report

Variant	rs1797064
Chromosome Location	chr6:119684562-119684563
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:119674592..119678182-chr6:119682701..119685453,4	K562	blood:
2	chr6:119674592..119677137-chr6:119682701..119685226,2	K562	blood:
3	chr6:119682940..119684767-chr6:119691573..119693912,2	K562	blood:
4	chr6:119669855..119672148-chr6:119684470..119687227,2	MCF-7	breast:
5	chr6:119669513..119671716-chr6:119683293..119685592,2	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ASF1A-2	chr6:119684420-119684585	NONHSAT114713

No data

Variant related genes	Relation type
ENSG00000111885	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11153813	0.98[ASN][1000 genomes]
rs11962211	0.84[JPT][hapmap]
rs12664079	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1295379	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1295380	0.80[YRI][hapmap];0.81[AFR][1000 genomes]
rs1295386	0.84[JPT][hapmap];0.85[ASN][1000 genomes]
rs1295390	1.00[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs195046	0.85[JPT][hapmap]
rs195062	0.81[ASN][1000 genomes]
rs195063	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs195071	0.84[JPT][hapmap];0.80[ASN][1000 genomes]
rs195076	0.90[ASN][1000 genomes]
rs195078	0.84[JPT][hapmap];0.81[ASN][1000 genomes]
rs195079	0.81[ASN][1000 genomes]
rs195081	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs195083	0.81[ASN][1000 genomes]
rs195085	0.84[ASN][1000 genomes]
rs195086	0.93[ASN][1000 genomes]
rs195091	0.82[JPT][hapmap]
rs2299879	0.82[JPT][hapmap]
rs4946409	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6569074	0.82[CHB][hapmap];0.85[JPT][hapmap];0.87[ASN][1000 genomes]
rs6569075	0.88[ASN][1000 genomes]
rs6921356	0.86[ASN][1000 genomes]
rs6924723	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7765368	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7773367	0.86[ASN][1000 genomes]
rs9372529	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9387646	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9401139	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025995	chr6:119407742-119709548	Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	esv3447598	chr6:119558591-120119384	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	esv3389526	chr6:119558598-120190087	ZNF genes & repeats Enhancers Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:119671800-119689200	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr6:119673400-119690000	Weak transcription	K562	blood
3	chr6:119673600-119687200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr6:119675200-119688800	Weak transcription	Brain Anterior Caudate	brain
5	chr6:119677000-119686000	Weak transcription	Primary B cells from cord blood	blood
6	chr6:119677000-119691800	Weak transcription	Adipose Nuclei	Adipose
7	chr6:119679400-119691600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr6:119681000-119690200	Weak transcription	Primary T cells from cord blood	blood
9	chr6:119682000-119693200	Weak transcription	Left Ventricle	heart
10	chr6:119683400-119684600	Enhancers	Fetal Heart	heart
11	chr6:119684200-119686200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
12	chr6:119684400-119685400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr6:119684400-119686000	Weak transcription	Primary hematopoietic stem cells	blood
14	chr6:119684400-119686200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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