Variant report

Variant	rs129884
Chromosome Location	chr9:136525086-136525087
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:2)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:2 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr9:136523321-136525593	HepG2	liver:	n/a	n/a
2	FOSL2	chr9:136522577-136525475	HepG2	liver:	n/a	n/a

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:136492846..136495441-chr9:136522709..136525633,2	MCF-7	breast:
2	chr9:136524956..136527895-chr9:136529322..136531931,3	MCF-7	breast:
3	chr9:136406344..136408415-chr9:136524304..136526688,2	MCF-7	breast:
4	chr9:136520134..136522462-chr9:136523738..136526239,2	MCF-7	breast:
5	chr9:136523144..136526065-chr9:136527921..136530216,2	MCF-7	breast:
6	chr9:136518974..136520647-chr9:136523004..136525968,2	K562	blood:
7	chr9:136518974..136521399-chr9:136523004..136525968,3	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SARDH-1	chr9:136522216-136525145	NONHSAT135332

No data

Variant related genes	Relation type
DBH-AS1	TF binding region
ENSG00000225756	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10761412	0.85[ASN][1000 genomes]
rs129882	0.84[CEU][hapmap];0.95[CHB][hapmap];0.88[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs129885	0.90[CHB][hapmap];0.84[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.85[TSI][hapmap];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs129886	0.90[CEU][hapmap];0.90[CHB][hapmap];0.83[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs129887	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4979627	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7033395	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7855248	0.84[ASN][1000 genomes]
rs7871224	0.82[ASN][1000 genomes]
rs9409876	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9409877	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894081	chr9:136227260-136678954	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv894086	chr9:136281753-136657960	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
3	nsv894094	chr9:136311679-136528721	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
4	nsv530972	chr9:136324358-136643044	Weak transcription Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
5	nsv894100	chr9:136371224-136547602	Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
6	nsv870051	chr9:136459745-136656889	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
7	nsv894106	chr9:136489539-136566959	Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv894107	chr9:136494566-136579589	Enhancers Bivalent Enhancer Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
9	nsv894108	chr9:136507473-136617292	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
10	nsv894110	chr9:136512515-136542868	Weak transcription Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
11	nsv466619	chr9:136515297-136528721	Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
12	nsv615640	chr9:136515297-136528721	Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
13	nsv894111	chr9:136522985-136563926	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:136520400-136525800	Enhancers	Primary T helper cells PMA-I stimulated	--
2	chr9:136521000-136526600	Enhancers	Liver	Liver
3	chr9:136521400-136525200	Enhancers	Primary T helper naive cells from peripheral blood	blood
4	chr9:136521800-136525200	Bivalent Enhancer	Fetal Brain Male	brain
5	chr9:136522000-136525200	Bivalent Enhancer	Fetal Muscle Leg	muscle
6	chr9:136522400-136525400	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
7	chr9:136522400-136526000	Bivalent Enhancer	Fetal Thymus	thymus
8	chr9:136523000-136525200	Bivalent Enhancer	Placenta	Placenta
9	chr9:136523000-136525400	Enhancers	Primary T cells from cord blood	blood
10	chr9:136523600-136525400	Enhancers	Esophagus	oesophagus
11	chr9:136524000-136526000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr9:136524400-136525200	Enhancers	Primary T helper cells fromperipheralblood	blood
13	chr9:136524400-136525400	Bivalent Enhancer	Fetal Muscle Trunk	muscle
14	chr9:136524400-136525400	Bivalent Enhancer	Rectal Mucosa Donor 29	rectum
15	chr9:136524400-136527800	Weak transcription	Ovary	ovary
16	chr9:136524400-136541200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr9:136524600-136525200	Enhancers	Breast Myoepithelial Primary Cells	Breast
18	chr9:136524600-136528800	Weak transcription	Spleen	Spleen
19	chr9:136524600-136530800	Weak transcription	Lung	lung
20	chr9:136524800-136525400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
21	chr9:136524800-136535600	Weak transcription	HepG2	liver
22	chr9:136524800-136537000	Weak transcription	Fetal Lung	lung
23	chr9:136524800-136542800	Weak transcription	Right Atrium	heart
24	chr9:136524800-136555600	Weak transcription	HSMM	muscle
25	chr9:136525000-136525400	Bivalent Enhancer	Primary hematopoietic stem cells short term culture	blood
26	chr9:136525000-136527800	Weak transcription	Pancreas	Pancrea
27	chr9:136525000-136530800	Weak transcription	Brain Germinal Matrix	brain
28	chr9:136525000-136556800	Weak transcription	Muscle Satellite Cultured Cells	--

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