The 2.0 version of rSNPBase

Variant report

Variant rs12989407
Chromosome Location chr2:113353527-113353528
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:88 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:113343200-113357400 Weak transcription ES-I3 Cell Line embryonic stem cell
2 chr2:113343200-113357400 Weak transcription Rectal Mucosa Donor 31 rectum
3 chr2:113343200-113357400 Weak transcription A549 lung
4 chr2:113343200-113357400 Weak transcription HMEC breast
5 chr2:113343200-113357400 Weak transcription NHDF-Ad bronchial
6 chr2:113343400-113357400 Weak transcription Primary hematopoietic stem cells blood
7 chr2:113343600-113357400 Weak transcription K562 blood
8 chr2:113343600-113357600 Weak transcription Primary T helper 17 cells PMA-I stimulated --
9 chr2:113343800-113357600 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
10 chr2:113344200-113360800 Weak transcription Fetal Brain Male brain
11 chr2:113344800-113357600 Weak transcription Colon Smooth Muscle Colon
12 chr2:113345200-113357400 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
13 chr2:113345200-113357600 Weak transcription Primary T killer memory cells from peripheral blood blood
14 chr2:113345400-113357600 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
15 chr2:113346400-113357600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
16 chr2:113346400-113357600 Weak transcription Liver Liver
17 chr2:113346400-113357600 Weak transcription Brain Angular Gyrus brain
18 chr2:113346400-113357600 Weak transcription Brain Anterior Caudate brain
19 chr2:113346400-113357600 Weak transcription Duodenum Mucosa Duodenum
20 chr2:113346400-113357600 Weak transcription Fetal Kidney kidney
21 chr2:113346800-113354000 Weak transcription Left Ventricle heart
22 chr2:113346800-113354000 Weak transcription Right Ventricle heart
23 chr2:113346800-113357400 Weak transcription Primary monocytes fromperipheralblood blood
24 chr2:113346800-113357400 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
25 chr2:113346800-113357400 Weak transcription Adipose Nuclei Adipose
26 chr2:113346800-113357400 Weak transcription Psoas Muscle Psoas
27 chr2:113346800-113357400 Weak transcription HepG2 liver
28 chr2:113346800-113357400 Weak transcription Osteobl bone
29 chr2:113346800-113357600 Weak transcription Brain Inferior Temporal Lobe brain
30 chr2:113346800-113357600 Weak transcription Brain Substantia Nigra brain
31 chr2:113346800-113357600 Weak transcription Skeletal Muscle Male skeletal muscle
32 chr2:113346800-113357600 Weak transcription Spleen Spleen
33 chr2:113346800-113357600 Weak transcription HSMM muscle
34 chr2:113346800-113357600 Weak transcription HSMMtube muscle
35 chr2:113346800-113357600 Weak transcription NHLF lung
36 chr2:113346800-113374600 Weak transcription Ovary ovary
37 chr2:113347200-113357400 Weak transcription Primary T helper naive cells from peripheral blood blood
38 chr2:113347200-113357400 Weak transcription NHEK skin
39 chr2:113347400-113357400 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
40 chr2:113347400-113357400 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
41 chr2:113347400-113357600 Weak transcription Placenta Amnion Placenta Amnion
42 chr2:113347400-113357600 Weak transcription Rectal Smooth Muscle rectum
43 chr2:113347400-113359200 Weak transcription Brain Germinal Matrix brain
44 chr2:113347600-113357400 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
45 chr2:113347600-113357400 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
46 chr2:113347600-113357600 Weak transcription Primary T helper cells PMA-I stimulated --
47 chr2:113347600-113363800 Weak transcription Rectal Mucosa Donor 29 rectum
48 chr2:113347800-113357400 Weak transcription Primary hematopoietic stem cells short term culture blood
49 chr2:113347800-113357800 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
50 chr2:113348400-113357400 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin

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Last update: Aug 31, 2015