Variant report

Variant	rs41294736
Chromosome Location	chr2:113531947-113531948
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11687733	1.00[ASN][1000 genomes]
rs12989407	1.00[ASN][1000 genomes]
rs17597976	1.00[ASN][1000 genomes]
rs2048874	1.00[ASN][1000 genomes]
rs35938455	1.00[ASN][1000 genomes]
rs62158651	1.00[ASN][1000 genomes]
rs7368977	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428724	chr2:113376894-113555421	Genic enhancers Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv1010106	chr2:113394981-113556071	Active TSS Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:113522800-113541600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr2:113523400-113539200	Weak transcription	Hela-S3	cervix
3	chr2:113523800-113532200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr2:113523800-113534600	Weak transcription	HMEC	breast
5	chr2:113526200-113532200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr2:113526200-113532200	Weak transcription	NHEK	skin
7	chr2:113526800-113537800	Weak transcription	NHDF-Ad	bronchial
8	chr2:113528400-113533800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
9	chr2:113530200-113534600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr2:113530200-113541200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr2:113530400-113533600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr2:113530400-113538600	Weak transcription	K562	blood
13	chr2:113531000-113533600	Weak transcription	Primary monocytes fromperipheralblood	blood
14	chr2:113531400-113532800	Enhancers	Fetal Heart	heart
15	chr2:113531600-113534800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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