Variant report

Variant	rs12989888
Chromosome Location	chr2:180341660-180341661
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10930875	0.90[EUR][1000 genomes]
rs11693292	0.88[EUR][1000 genomes]
rs12990747	0.86[CEU][hapmap];0.95[CHB][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13007260	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1607263	0.89[EUR][1000 genomes]
rs16866747	1.00[CEU][hapmap];0.90[CHB][hapmap];0.81[JPT][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34822738	0.86[EUR][1000 genomes]
rs34880595	0.83[EUR][1000 genomes]
rs35959339	0.89[EUR][1000 genomes]
rs4894102	0.84[EUR][1000 genomes]
rs58313907	0.89[EUR][1000 genomes]
rs72950544	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7589355	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:180309200-180352200	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr2:180325200-180351400	Weak transcription	Psoas Muscle	Psoas
3	chr2:180332400-180345800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr2:180332800-180352600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr2:180341200-180350600	Strong transcription	Liver	Liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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