Variant report

Variant	rs12990747
Chromosome Location	chr2:180342077-180342078
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10930875	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11686958	0.84[CHD][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs11693292	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12989888	0.86[CEU][hapmap];0.95[CHB][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13007260	0.89[AFR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1607263	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1607264	0.92[ASN][1000 genomes]
rs16866747	0.86[CEU][hapmap];0.86[CHB][hapmap];0.84[CHD][hapmap];0.94[GIH][hapmap];0.89[TSI][hapmap];0.94[EUR][1000 genomes]
rs34822738	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34880595	0.88[EUR][1000 genomes]
rs35959339	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4894102	0.88[EUR][1000 genomes]
rs58313907	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72950544	0.94[EUR][1000 genomes]
rs72950575	0.85[ASN][1000 genomes]
rs7589355	0.92[EUR][1000 genomes]
rs7595030	0.82[CHB][hapmap]

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:180309200-180352200	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr2:180325200-180351400	Weak transcription	Psoas Muscle	Psoas
3	chr2:180332400-180345800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr2:180332800-180352600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr2:180341200-180350600	Strong transcription	Liver	Liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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