Variant report

Variant	rs58313907
Chromosome Location	chr2:180350166-180350167
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10930875	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11686958	0.95[ASN][1000 genomes]
rs11693292	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12989888	0.89[EUR][1000 genomes]
rs12990747	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13007260	0.88[EUR][1000 genomes]
rs1607263	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1607264	0.94[ASN][1000 genomes]
rs16866747	0.87[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs34822738	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34880595	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35959339	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4894102	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72950544	0.89[EUR][1000 genomes]
rs72950575	0.88[ASN][1000 genomes]
rs7589355	0.87[EUR][1000 genomes]

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:180309200-180352200	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr2:180325200-180351400	Weak transcription	Psoas Muscle	Psoas
3	chr2:180332800-180352600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr2:180341200-180350600	Strong transcription	Liver	Liver
5	chr2:180345800-180350200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr2:180348200-180351800	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr2:180348400-180351400	Weak transcription	HUVEC	blood vessel
8	chr2:180348600-180352200	Weak transcription	Gastric	stomach
9	chr2:180349600-180353000	Enhancers	Fetal Heart	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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