Variant report

Variant	rs12995036
Chromosome Location	chr2:21513766-21513767
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10514650	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12713252	1.00[ASN][1000 genomes]
rs12993526	1.00[ASN][1000 genomes]
rs17395484	1.00[ASN][1000 genomes]
rs182584	1.00[ASN][1000 genomes]
rs312032	1.00[ASN][1000 genomes]
rs312034	1.00[ASN][1000 genomes]
rs312035	1.00[ASN][1000 genomes]
rs312037	1.00[ASN][1000 genomes]
rs312038	1.00[ASN][1000 genomes]
rs312039	1.00[ASN][1000 genomes]
rs312040	1.00[ASN][1000 genomes]
rs312044	1.00[ASN][1000 genomes]
rs35127135	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72898450	1.00[ASN][1000 genomes]
rs72898452	1.00[ASN][1000 genomes]
rs72898454	1.00[ASN][1000 genomes]
rs72898467	1.00[ASN][1000 genomes]
rs7601166	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011486	chr2:21475803-22364002	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv535602	chr2:21475803-22364002	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:21510600-21514600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr2:21510600-21514600	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr2:21511400-21527400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr2:21513000-21514600	Weak transcription	Brain Cingulate Gyrus	brain
5	chr2:21513000-21517400	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr2:21513000-21538200	Weak transcription	Aorta	Aorta
7	chr2:21513200-21514200	Weak transcription	Brain Hippocampus Middle	brain
8	chr2:21513200-21514400	Weak transcription	Brain Angular Gyrus	brain
9	chr2:21513200-21515400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr2:21513400-21514600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr2:21513400-21517000	Weak transcription	Ovary	ovary
12	chr2:21513600-21514000	Weak transcription	Brain Substantia Nigra	brain
13	chr2:21513600-21518200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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