Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10495987	0.86[CHB][hapmap];0.91[CHD][hapmap];0.86[JPT][hapmap];0.83[ASN][1000 genomes]
rs1156742	0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12465974	0.86[ASN][1000 genomes]
rs12621581	0.91[JPT][hapmap]
rs1363046	0.86[JPT][hapmap]
rs1421586	0.91[JPT][hapmap]
rs1421594	0.86[JPT][hapmap]
rs1592729	0.96[CEU][hapmap];0.91[CHB][hapmap];0.93[CHD][hapmap];0.95[JPT][hapmap];0.95[LWK][hapmap];0.94[MKK][hapmap];0.88[TSI][hapmap];0.92[YRI][hapmap];0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17039529	0.82[JPT][hapmap]
rs17039564	0.91[JPT][hapmap]
rs17039573	0.87[JPT][hapmap]
rs17039575	0.91[JPT][hapmap]
rs17039577	0.83[JPT][hapmap]
rs17039582	0.83[JPT][hapmap]
rs3850356	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4461296	0.92[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.92[YRI][hapmap];0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6545136	0.85[ASN][1000 genomes]
rs6713560	0.86[JPT][hapmap]
rs6713940	0.86[JPT][hapmap]
rs725323	0.91[JPT][hapmap]
rs7573698	0.86[JPT][hapmap]
rs7574241	0.86[JPT][hapmap]
rs9679140	0.91[JPT][hapmap]
rs971732	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3388948	chr2:50092667-50602681	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases
2	esv3399511	chr2:50092687-50602651	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv979004	chr2:50092805-50120656	Enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12998574	KLRAQ1	cis	cerebellum	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:50115800-50117800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr2:50116200-50117800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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