Variant report
| Variant | rs4461296 |
|---|---|
| Chromosome Location | chr2:50100835-50100836 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:1 , 50 per page) page:
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| No data |
| No data |
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| Variant related genes | Relation type |
|---|---|
| RPL7P13 | TF binding region |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs10495987 | 0.86[CHB][hapmap];0.81[JPT][hapmap] |
| rs1156742 | 0.91[AMR][1000 genomes];0.92[ASN][1000 genomes] |
| rs12465974 | 0.84[ASN][1000 genomes] |
| rs12621581 | 0.86[JPT][hapmap] |
| rs12998574 | 0.92[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.92[YRI][hapmap];0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs1363046 | 0.82[JPT][hapmap] |
| rs1421586 | 0.87[JPT][hapmap] |
| rs1421594 | 0.81[JPT][hapmap] |
| rs1592729 | 0.96[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs17039564 | 0.87[JPT][hapmap] |
| rs17039573 | 0.83[JPT][hapmap] |
| rs17039575 | 0.86[JPT][hapmap] |
| rs3850356 | 0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs6713560 | 0.83[JPT][hapmap] |
| rs6713940 | 0.81[JPT][hapmap] |
| rs725323 | 0.87[JPT][hapmap] |
| rs7573698 | 0.82[JPT][hapmap] |
| rs7574241 | 0.81[JPT][hapmap] |
| rs9679140 | 0.86[JPT][hapmap] |
| rs971732 | 0.83[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3388948 | chr2:50092667-50602681 | Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive regionmiRNA target site | 4 gene(s) | inside rSNPs | diseases |
| 2 | esv3399511 | chr2:50092687-50602651 | Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive regionmiRNA target site | 4 gene(s) | inside rSNPs | diseases |
| 3 | nsv522572 | chr2:50092753-50108782 | Enhancers | TF binding regionChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 4 | nsv979004 | chr2:50092805-50120656 | Enhancers | TF binding regionChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
