Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAFK	chr2:50100800-50101034	HepG2	liver:	n/a	n/a

Variant related genes	Relation type
RPL7P13	TF binding region

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10495987	0.88[CHD][hapmap];0.81[JPT][hapmap];0.80[ASN][1000 genomes]
rs1156742	0.92[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12465974	0.84[ASN][1000 genomes]
rs12621581	0.86[JPT][hapmap]
rs12998574	0.96[CEU][hapmap];0.91[CHB][hapmap];0.93[CHD][hapmap];0.95[JPT][hapmap];0.95[LWK][hapmap];0.94[MKK][hapmap];0.88[TSI][hapmap];0.92[YRI][hapmap];0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1363046	0.82[JPT][hapmap]
rs1421586	0.87[JPT][hapmap]
rs1421594	0.81[JPT][hapmap]
rs17039564	0.87[JPT][hapmap]
rs17039573	0.83[JPT][hapmap]
rs17039575	0.86[JPT][hapmap]
rs3850356	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4461296	0.96[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6545136	0.82[ASN][1000 genomes]
rs6713560	0.82[JPT][hapmap]
rs6713940	0.81[JPT][hapmap]
rs725323	0.87[JPT][hapmap]
rs7573698	0.82[JPT][hapmap]
rs7574241	0.81[JPT][hapmap]
rs9679140	0.86[JPT][hapmap]
rs971732	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3388948	chr2:50092667-50602681	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases
2	esv3399511	chr2:50092687-50602651	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv522572	chr2:50092753-50108782	Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv979004	chr2:50092805-50120656	Enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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