Variant report
| Variant | rs1299916 |
|---|---|
| Chromosome Location | chr7:15951920-15951921 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs10224295 | 0.86[ASN][1000 genomes] |
| rs10241996 | 0.85[EUR][1000 genomes] |
| rs10255693 | 0.85[EUR][1000 genomes] |
| rs10278969 | 0.86[ASN][1000 genomes] |
| rs10950589 | 0.81[AFR][1000 genomes];0.85[EUR][1000 genomes] |
| rs10950592 | 0.84[EUR][1000 genomes] |
| rs12531399 | 0.84[ASN][1000 genomes] |
| rs12534575 | 0.85[EUR][1000 genomes] |
| rs12537919 | 0.85[EUR][1000 genomes] |
| rs12668133 | 0.91[EUR][1000 genomes] |
| rs12669397 | 0.89[EUR][1000 genomes] |
| rs12674430 | 0.91[EUR][1000 genomes] |
| rs12699760 | 0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs13230922 | 0.85[EUR][1000 genomes] |
| rs13239842 | 0.91[EUR][1000 genomes] |
| rs13241777 | 0.85[EUR][1000 genomes] |
| rs13246823 | 0.85[EUR][1000 genomes] |
| rs17351518 | 0.86[ASN][1000 genomes] |
| rs2215169 | 0.86[ASN][1000 genomes] |
| rs38237 | 0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs6461209 | 0.86[ASN][1000 genomes] |
| rs6948282 | 0.82[AFR][1000 genomes];0.91[EUR][1000 genomes] |
| rs6959942 | 0.86[ASN][1000 genomes] |
| rs9791535 | 0.86[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv523199 | chr7:15582208-16042596 | Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 11 gene(s) | inside rSNPs | diseases |
| 2 | nsv1016642 | chr7:15884061-16799788 | Genic enhancers Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 56 gene(s) | inside rSNPs | diseases |
| 3 | nsv1017958 | chr7:15910153-15956470 | Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:15946400-15955400 | Weak transcription | Rectal Smooth Muscle | rectum |
