Variant report

Variant	rs6461209
Chromosome Location	chr7:15956388-15956389
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:15955267..15957693-chr7:15974761..15976318,2	MCF-7	breast:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10224295	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10253795	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10278969	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12531399	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12699757	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1298311	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1299916	0.86[ASN][1000 genomes]
rs17351518	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2215169	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs38224	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs38226	0.80[AMR][1000 genomes]
rs38234	0.80[AMR][1000 genomes]
rs38236	0.81[AMR][1000 genomes]
rs38238	0.83[AMR][1000 genomes]
rs38239	0.83[AMR][1000 genomes]
rs38251	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs38252	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs38258	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6949049	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6959942	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6962520	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6965426	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6970657	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs768667	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs800713	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs800715	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv523199	chr7:15582208-16042596	Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv1016642	chr7:15884061-16799788	Genic enhancers Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
3	nsv1017958	chr7:15910153-15956470	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:15955400-15956400	Enhancers	Sigmoid Colon	Sigmoid Colon
2	chr7:15955400-15956400	Enhancers	Osteobl	bone
3	chr7:15955400-15956600	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr7:15955400-15956600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr7:15955400-15957600	Enhancers	Colon Smooth Muscle	Colon
6	chr7:15955400-15957600	Enhancers	Rectal Smooth Muscle	rectum
7	chr7:15955600-15956400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr7:15955600-15956400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr7:15955600-15957000	Enhancers	Duodenum Smooth Muscle	Duodenum
10	chr7:15956000-15956400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr7:15956000-15956800	Enhancers	Fetal Heart	heart
12	chr7:15956000-15957600	Enhancers	Muscle Satellite Cultured Cells	--
13	chr7:15956000-15958000	Enhancers	Fetal Stomach	stomach
14	chr7:15956000-15961000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr7:15956200-15956400	Enhancers	Fetal Lung	lung
16	chr7:15956200-15956400	Flanking Active TSS	Stomach Smooth Muscle	stomach
17	chr7:15956200-15956400	Enhancers	NHLF	lung
18	chr7:15956200-15956600	Flanking Active TSS	Adipose Nuclei	Adipose
19	chr7:15956200-15956600	Active TSS	Fetal Brain Male	brain
20	chr7:15956200-15956800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr7:15956200-15957200	Flanking Active TSS	NHDF-Ad	bronchial
22	chr7:15956200-15957400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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