Variant report

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10224295	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10253795	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12531399	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12699757	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1298311	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1299916	0.86[ASN][1000 genomes]
rs17351518	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2215169	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs38224	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs38226	0.81[AMR][1000 genomes]
rs38231	0.80[AMR][1000 genomes]
rs38234	0.81[AMR][1000 genomes]
rs38236	0.82[AMR][1000 genomes]
rs38238	0.85[AMR][1000 genomes]
rs38239	0.85[AMR][1000 genomes]
rs38251	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs38252	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs38258	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6461209	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6949049	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6959942	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6962520	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6965426	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6970657	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs768667	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs800713	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs800715	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv523199	chr7:15582208-16042596	Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv1016642	chr7:15884061-16799788	Genic enhancers Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:15956000-15958000	Enhancers	Fetal Stomach	stomach
2	chr7:15956000-15961000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr7:15956800-15961000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr7:15957000-15961000	Weak transcription	NHLF	lung
5	chr7:15957200-15958000	Enhancers	NHDF-Ad	bronchial
6	chr7:15957200-15958000	Enhancers	Osteobl	bone
7	chr7:15957200-15960800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr7:15957200-15960800	Weak transcription	NH-A	brain
9	chr7:15957400-15960600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr7:15957600-15958200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr7:15957600-15960600	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr7:15957600-15961000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr7:15957600-15961000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr7:15957800-15960600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

Quick Search: