Variant report
| Variant | rs38224 |
|---|---|
| Chromosome Location | chr7:15927187-15927188 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs10224295 | 0.84[AMR][1000 genomes];0.86[ASN][1000 genomes] |
| rs10253795 | 0.82[AMR][1000 genomes] |
| rs10278969 | 0.82[AMR][1000 genomes];0.85[ASN][1000 genomes] |
| rs12531399 | 0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs12699757 | 0.83[AMR][1000 genomes] |
| rs17351518 | 0.84[AMR][1000 genomes];0.85[ASN][1000 genomes] |
| rs2215169 | 0.80[AMR][1000 genomes];0.85[ASN][1000 genomes] |
| rs38208 | 0.85[AMR][1000 genomes] |
| rs38209 | 0.88[AMR][1000 genomes] |
| rs38220 | 0.86[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs38222 | 0.90[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs38223 | 0.86[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs38226 | 0.90[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs38231 | 0.89[AMR][1000 genomes] |
| rs38233 | 0.88[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs38234 | 0.90[AMR][1000 genomes];0.80[EUR][1000 genomes] |
| rs38236 | 0.82[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs38238 | 0.84[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs38239 | 0.84[AMR][1000 genomes] |
| rs6461209 | 0.81[AMR][1000 genomes];0.85[ASN][1000 genomes] |
| rs6959942 | 0.85[AMR][1000 genomes];0.85[ASN][1000 genomes] |
| rs6962520 | 0.80[AMR][1000 genomes] |
| rs6965426 | 0.81[AMR][1000 genomes] |
| rs800713 | 0.80[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv523199 | chr7:15582208-16042596 | Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 11 gene(s) | inside rSNPs | diseases |
| 2 | nsv1016642 | chr7:15884061-16799788 | Genic enhancers Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 56 gene(s) | inside rSNPs | diseases |
| 3 | nsv1017958 | chr7:15910153-15956470 | Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:15924000-15929200 | Weak transcription | Psoas Muscle | Psoas |
| 2 | chr7:15926000-15927800 | Enhancers | Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells | embryonic stem cell |
