Variant report

Variant	rs13001694
Chromosome Location	chr2:178118990-178118991
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr2:178118014..178120377-chr2:178191439..178193485,2	K562	blood:
2	chr2:178027758..178037377-chr2:178117808..178124193,11	K562	blood:
3	chr2:178025635..178032947-chr2:178118593..178131370,24	K562	blood:
4	chr2:178051306..178053456-chr2:178118294..178119937,2	K562	blood:
5	chr2:178029028..178029833-chr2:178118869..178119813,3	K562	blood:
6	chr2:178118882..178120142-chr2:178128426..178129490,3	K562	blood:
7	chr2:178117173..178120144-chr2:178201534..178205141,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000236501	Chromatin interaction
ENSG00000116044	Chromatin interaction
ENSG00000222043	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10183914	0.96[CEU][hapmap];0.86[EUR][1000 genomes]
rs13005431	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13028464	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17524059	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17581525	0.86[EUR][1000 genomes]
rs17647588	0.93[EUR][1000 genomes]
rs34468415	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34551701	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35284526	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35440573	0.85[EUR][1000 genomes]
rs36030784	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62173695	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:178078600-178121400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr2:178107200-178126000	Weak transcription	Brain Germinal Matrix	brain
3	chr2:178107800-178123000	Enhancers	Psoas Muscle	Psoas
4	chr2:178108200-178122600	Enhancers	Adipose Nuclei	Adipose
5	chr2:178110200-178119400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr2:178111000-178119200	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr2:178111000-178119600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr2:178111000-178119600	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr2:178111200-178119000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr2:178111200-178119200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr2:178111400-178119000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr2:178112600-178119600	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr2:178113400-178126600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
14	chr2:178113800-178119200	Weak transcription	Fetal Stomach	stomach
15	chr2:178114200-178119000	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr2:178114600-178119000	Enhancers	Brain Anterior Caudate	brain
17	chr2:178114600-178125800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
18	chr2:178114600-178126000	Enhancers	Primary T helper naive cells from peripheral blood	blood
19	chr2:178114800-178119000	Enhancers	Brain Substantia Nigra	brain
20	chr2:178114800-178119200	Enhancers	Brain Angular Gyrus	brain
21	chr2:178114800-178119200	Enhancers	Colon Smooth Muscle	Colon
22	chr2:178114800-178121400	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr2:178114800-178122600	Enhancers	Brain Hippocampus Middle	brain
24	chr2:178114800-178123200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
25	chr2:178114800-178123400	Enhancers	Stomach Mucosa	stomach
26	chr2:178115000-178119200	Enhancers	Liver	Liver
27	chr2:178115000-178120600	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr2:178115000-178123600	Enhancers	Duodenum Smooth Muscle	Duodenum
29	chr2:178115200-178119200	Enhancers	Primary monocytes fromperipheralblood	blood
30	chr2:178115200-178119200	Enhancers	Spleen	Spleen
31	chr2:178115400-178119400	Genic enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr2:178115400-178119800	Genic enhancers	HSMM	muscle
33	chr2:178115600-178121800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
34	chr2:178116000-178119200	Enhancers	Rectal Smooth Muscle	rectum
35	chr2:178116200-178119000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
36	chr2:178116200-178119400	Genic enhancers	NHLF	lung
37	chr2:178116200-178120000	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr2:178116400-178119000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
39	chr2:178116400-178119000	Weak transcription	HUES6 Cell Line	embryonic stem cell
40	chr2:178116400-178119000	Enhancers	Primary T helper cells fromperipheralblood	blood
41	chr2:178116400-178122800	Enhancers	Fetal Intestine Large	intestine
42	chr2:178116600-178121200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr2:178116600-178121600	Enhancers	Fetal Intestine Small	intestine
44	chr2:178116800-178119200	Weak transcription	Fetal Muscle Trunk	muscle
45	chr2:178117000-178119000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
46	chr2:178117000-178119400	Weak transcription	Placenta Amnion	Placenta Amnion
47	chr2:178117200-178119200	Enhancers	Stomach Smooth Muscle	stomach
48	chr2:178117200-178119400	Enhancers	HUVEC	blood vessel
49	chr2:178117200-178122800	Enhancers	Fetal Heart	heart
50	chr2:178117400-178119400	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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