Variant report

Variant	rs17581525
Chromosome Location	chr2:178146362-178146363
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:178134954..178137306-chr2:178146241..178147747,2	MCF-7	breast:

Extended variants
information (count: 13 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10183914	0.96[CEU][hapmap]
rs13001694	0.96[CEU][hapmap];0.86[EUR][1000 genomes]
rs13005431	0.96[CEU][hapmap];0.87[EUR][1000 genomes]
rs13028464	0.89[EUR][1000 genomes]
rs17524059	0.85[EUR][1000 genomes]
rs17647588	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1806649	0.85[CHD][hapmap]
rs34468415	0.91[EUR][1000 genomes]
rs34551701	0.90[EUR][1000 genomes]
rs35284526	0.87[EUR][1000 genomes]
rs35440573	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs36030784	0.86[EUR][1000 genomes]
rs62173695	0.91[EUR][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs17581525	HOXD11	cis	cerebellum	SCAN
rs17581525	SP9	cis	cerebellum	SCAN

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:178131600-178154800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr2:178131800-178146800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr2:178139600-178154800	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr2:178140800-178146600	Weak transcription	Brain Hippocampus Middle	brain
5	chr2:178140800-178146600	Weak transcription	Stomach Smooth Muscle	stomach
6	chr2:178140800-178146800	Weak transcription	Brain Cingulate Gyrus	brain
7	chr2:178141400-178146800	Weak transcription	Osteobl	bone
8	chr2:178142200-178146800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr2:178143800-178146400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr2:178144000-178147800	Enhancers	Hela-S3	cervix
11	chr2:178144800-178146400	Weak transcription	Psoas Muscle	Psoas
12	chr2:178144800-178147600	Enhancers	Primary neutrophils fromperipheralblood	blood
13	chr2:178144800-178148800	Enhancers	Primary monocytes fromperipheralblood	blood
14	chr2:178145000-178146400	Weak transcription	Right Ventricle	heart
15	chr2:178145000-178146600	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr2:178145000-178146600	Weak transcription	Skeletal Muscle Male	skeletal muscle
17	chr2:178145000-178151600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr2:178145000-178160200	Weak transcription	Adipose Nuclei	Adipose
19	chr2:178145200-178146800	Enhancers	Monocytes-CD14+_RO01746	blood
20	chr2:178145400-178146800	Enhancers	Primary B cells from cord blood	blood
21	chr2:178145600-178160200	Weak transcription	Aorta	Aorta
22	chr2:178145800-178146800	Weak transcription	Brain Inferior Temporal Lobe	brain
23	chr2:178145800-178147200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr2:178146000-178146600	Enhancers	Duodenum Mucosa	Duodenum
25	chr2:178146000-178146600	Enhancers	Fetal Heart	heart
26	chr2:178146000-178147200	Weak transcription	Primary hematopoietic stem cells	blood
27	chr2:178146000-178147200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr2:178146000-178147600	Enhancers	HMEC	breast
29	chr2:178146000-178147800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
30	chr2:178146000-178148800	Enhancers	Primary B cells from peripheral blood	blood
31	chr2:178146000-178148800	Enhancers	Primary hematopoietic stem cells short term culture	blood
32	chr2:178146200-178146600	Genic enhancers	Esophagus	oesophagus
33	chr2:178146200-178146800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr2:178146200-178147000	Enhancers	Right Atrium	heart
35	chr2:178146200-178147200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr2:178146200-178147200	Enhancers	Left Ventricle	heart
37	chr2:178146200-178147400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr2:178146200-178147400	Enhancers	Fetal Thymus	thymus
39	chr2:178146200-178147400	Flanking Active TSS	GM12878-XiMat	blood
40	chr2:178146200-178147400	Enhancers	NHEK	skin
41	chr2:178146200-178147800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr2:178146200-178147800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr2:178146200-178147800	Enhancers	Breast Myoepithelial Primary Cells	Breast
44	chr2:178146200-178148000	Enhancers	K562	blood
45	chr2:178146200-178148200	Enhancers	Skeletal Muscle Female	skeletal muscle
46	chr2:178146200-178148400	Enhancers	Liver	Liver
47	chr2:178146200-178148800	Enhancers	HepG2	liver

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