Variant report

Variant	rs35440573
Chromosome Location	chr2:178144813-178144814
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:178126737..178131707-chr2:178140405..178145357,7	MCF-7	breast:

Variant related genes	Relation type
ENSG00000116044	Chromatin interaction
ENSG00000222043	Chromatin interaction

rs_ID	r²[population]
rs13001694	0.85[EUR][1000 genomes]
rs13005431	0.85[EUR][1000 genomes]
rs13028464	0.87[EUR][1000 genomes]
rs17524059	0.84[EUR][1000 genomes]
rs17581525	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17647588	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34468415	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34551701	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35284526	0.86[EUR][1000 genomes]
rs36030784	0.85[EUR][1000 genomes]
rs62173695	0.89[EUR][1000 genomes]

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:178131600-178154800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr2:178131800-178146800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr2:178138800-178146200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr2:178139600-178154800	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr2:178140600-178146200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr2:178140600-178146200	Weak transcription	Right Atrium	heart
7	chr2:178140800-178146000	Weak transcription	HMEC	breast
8	chr2:178140800-178146200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr2:178140800-178146200	Weak transcription	Liver	Liver
10	chr2:178140800-178146600	Weak transcription	Brain Hippocampus Middle	brain
11	chr2:178140800-178146600	Weak transcription	Stomach Smooth Muscle	stomach
12	chr2:178140800-178146800	Weak transcription	Brain Cingulate Gyrus	brain
13	chr2:178141400-178146800	Weak transcription	Osteobl	bone
14	chr2:178141800-178146200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr2:178141800-178146200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr2:178142200-178146800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr2:178143000-178145400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr2:178143200-178146200	Weak transcription	NHEK	skin
19	chr2:178143800-178146400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr2:178144000-178147800	Enhancers	Hela-S3	cervix
21	chr2:178144200-178145000	Enhancers	Left Ventricle	heart
22	chr2:178144400-178145000	Enhancers	Esophagus	oesophagus
23	chr2:178144400-178145000	Enhancers	Right Ventricle	heart
24	chr2:178144600-178145000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr2:178144600-178145000	Enhancers	Adipose Nuclei	Adipose
26	chr2:178144600-178145000	Enhancers	Skeletal Muscle Female	skeletal muscle
27	chr2:178144600-178145600	Enhancers	Aorta	Aorta
28	chr2:178144600-178145600	Enhancers	Fetal Heart	heart
29	chr2:178144600-178146200	Enhancers	GM12878-XiMat	blood
30	chr2:178144800-178145000	Enhancers	Sigmoid Colon	Sigmoid Colon
31	chr2:178144800-178145000	Enhancers	Skeletal Muscle Male	skeletal muscle
32	chr2:178144800-178146400	Weak transcription	Psoas Muscle	Psoas
33	chr2:178144800-178147600	Enhancers	Primary neutrophils fromperipheralblood	blood
34	chr2:178144800-178148800	Enhancers	Primary monocytes fromperipheralblood	blood

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