Variant report

Variant	rs13005161
Chromosome Location	chr2:205356323-205356324
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10490267	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1156249	0.83[EUR][1000 genomes]
rs12990859	0.92[EUR][1000 genomes]
rs13001546	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13003798	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13007075	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13021097	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13024043	0.83[EUR][1000 genomes]
rs1447490	0.83[EUR][1000 genomes]
rs1550909	0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17637778	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34816339	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35207649	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs60341493	0.85[ASN][1000 genomes]
rs71427750	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs71427751	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs71427753	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs921163	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv964353	chr2:205303005-205473935	Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:205351800-205359800	Weak transcription	Colon Smooth Muscle	Colon
2	chr2:205355200-205357000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr2:205355600-205356600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr2:205355600-205356800	Enhancers	NHEK	skin
5	chr2:205355800-205356800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr2:205356000-205356400	Enhancers	Osteobl	bone
7	chr2:205356000-205356600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr2:205356000-205356600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr2:205356000-205356600	Enhancers	Muscle Satellite Cultured Cells	--
10	chr2:205356000-205356600	Enhancers	Cortex derived primary cultured neurospheres	brain
11	chr2:205356000-205356600	Enhancers	HUVEC	blood vessel
12	chr2:205356000-205356600	Enhancers	NHDF-Ad	bronchial
13	chr2:205356000-205357000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr2:205356000-205357000	Enhancers	NH-A	brain
15	chr2:205356200-205356600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr2:205356200-205356600	Enhancers	Brain Substantia Nigra	brain
17	chr2:205356200-205359600	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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