Variant report

Variant	rs1550909
Chromosome Location	chr2:205338431-205338432
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10490267	1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1156249	0.85[EUR][1000 genomes]
rs12990859	0.92[EUR][1000 genomes]
rs13001546	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13003798	0.97[EUR][1000 genomes]
rs13005161	0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13007075	0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13021097	0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13024043	0.83[EUR][1000 genomes]
rs1447488	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1447490	0.85[EUR][1000 genomes]
rs17637778	0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34816339	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35207649	0.92[EUR][1000 genomes]
rs60341493	0.92[ASN][1000 genomes]
rs71427750	0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs71427751	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs71427753	0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs921163	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv964353	chr2:205303005-205473935	Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv34706	chr2:205309211-205348724	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1012465	chr2:205335630-205349444	Enhancers Flanking Active TSS Weak transcription	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:205335000-205341000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr2:205335800-205341400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr2:205336000-205340800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr2:205337000-205338800	Enhancers	Hela-S3	cervix
5	chr2:205337400-205344000	Weak transcription	K562	blood
6	chr2:205337800-205341000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr2:205338200-205350400	Weak transcription	NHLF	lung
8	chr2:205338400-205340600	Weak transcription	HSMMtube	muscle
9	chr2:205338400-205341200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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