Variant report

Variant	rs17637778
Chromosome Location	chr2:205352165-205352166
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10490267	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1156249	0.83[EUR][1000 genomes]
rs12990859	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13001546	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13003798	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13005161	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13007075	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13010221	0.83[AMR][1000 genomes]
rs13021097	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13024043	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1447490	0.83[EUR][1000 genomes]
rs1550909	1.00[CEU][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17637637	0.83[AMR][1000 genomes]
rs34816339	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35207649	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs60341493	0.85[ASN][1000 genomes]
rs71427750	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs71427751	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs71427753	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs921163	1.00[CEU][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv964353	chr2:205303005-205473935	Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:205348400-205352600	Enhancers	Fetal Brain Male	brain
2	chr2:205348800-205352400	Weak transcription	HepG2	liver
3	chr2:205349800-205353000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr2:205350400-205352600	Enhancers	NHEK	skin
5	chr2:205350800-205352600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr2:205350800-205353000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr2:205351000-205352800	Enhancers	NHLF	lung
8	chr2:205351200-205352600	Enhancers	Fetal Stomach	stomach
9	chr2:205351400-205352200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr2:205351400-205352200	Enhancers	HSMM	muscle
11	chr2:205351400-205352800	Enhancers	Muscle Satellite Cultured Cells	--
12	chr2:205351400-205353000	Enhancers	Fetal Intestine Large	intestine
13	chr2:205351400-205353200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr2:205351600-205352400	Enhancers	Fetal Kidney	kidney
15	chr2:205351600-205352600	Enhancers	Fetal Intestine Small	intestine
16	chr2:205351800-205352200	Enhancers	Fetal Brain Female	brain
17	chr2:205351800-205352200	Weak transcription	Fetal Muscle Leg	muscle
18	chr2:205351800-205352800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr2:205351800-205352800	Enhancers	NHDF-Ad	bronchial
20	chr2:205351800-205353000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr2:205351800-205359800	Weak transcription	Colon Smooth Muscle	Colon
22	chr2:205352000-205356000	Weak transcription	Osteobl	bone

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