Variant report

Variant	rs13010221
Chromosome Location	chr2:205311090-205311091
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10084416	0.90[ASN][1000 genomes]
rs10932063	0.89[ASN][1000 genomes]
rs1156249	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11690070	0.89[ASN][1000 genomes]
rs12472876	0.84[ASN][1000 genomes]
rs12616166	0.88[ASN][1000 genomes]
rs13003798	0.83[AMR][1000 genomes]
rs13007075	0.83[AMR][1000 genomes]
rs13021097	0.83[AMR][1000 genomes]
rs13024043	0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1374708	0.89[ASN][1000 genomes]
rs1374709	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1447488	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1447490	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1447493	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1447495	0.94[ASN][1000 genomes]
rs17637637	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17637778	0.83[AMR][1000 genomes]
rs34157021	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34368384	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34816339	0.83[AMR][1000 genomes]
rs35071164	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35207649	0.87[AMR][1000 genomes]
rs4675457	0.83[ASN][1000 genomes]
rs71427747	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs71427750	0.87[AMR][1000 genomes]
rs71427753	0.83[AMR][1000 genomes]
rs7602656	0.94[ASN][1000 genomes]
rs959032	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs959033	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv964353	chr2:205303005-205473935	Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv34706	chr2:205309211-205348724	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:205304000-205314200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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