Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:205298407..205299915-chr2:205301939..205303492,2	K562	blood:

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10084416	0.92[ASN][1000 genomes]
rs10490267	0.81[EUR][1000 genomes]
rs10932063	0.94[ASN][1000 genomes]
rs1156249	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11690070	0.94[ASN][1000 genomes]
rs12472876	0.89[ASN][1000 genomes]
rs12616166	0.90[ASN][1000 genomes]
rs12990859	0.80[EUR][1000 genomes]
rs13010221	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13024043	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1374708	0.94[ASN][1000 genomes]
rs1374709	0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1447488	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1447490	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1447493	0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1447495	1.00[ASN][1000 genomes]
rs17637637	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34157021	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35071164	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35207649	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4675457	0.85[ASN][1000 genomes]
rs71427747	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs71427750	0.83[AMR][1000 genomes]
rs7602656	1.00[ASN][1000 genomes]
rs959032	0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs959033	0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875721	chr2:205232072-205306024	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:205300600-205304000	Enhancers	HepG2	liver
2	chr2:205302000-205304000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr2:205302200-205303200	Enhancers	Lung	lung
4	chr2:205302200-205303400	Enhancers	Gastric	stomach
5	chr2:205302200-205303400	Enhancers	Pancreas	Pancrea
6	chr2:205302200-205303800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr2:205302400-205303000	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr2:205302400-205303600	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr2:205302400-205303600	Weak transcription	Fetal Lung	lung
10	chr2:205302400-205303600	Enhancers	Spleen	Spleen
11	chr2:205302400-205303800	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr2:205302400-205303800	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr2:205302800-205303200	Flanking Active TSS	HUVEC	blood vessel
14	chr2:205302800-205303800	Enhancers	ES-I3 Cell Line	embryonic stem cell

Quick Search: