Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10084416	0.83[ASN][1000 genomes]
rs10932063	0.82[ASN][1000 genomes]
rs1156249	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11690070	0.82[ASN][1000 genomes]
rs12616166	0.85[ASN][1000 genomes]
rs13010221	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13024043	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1374708	0.81[ASN][1000 genomes]
rs1374709	0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1447488	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1447490	0.88[EUR][1000 genomes]
rs1447493	0.95[EUR][1000 genomes]
rs1447495	0.87[ASN][1000 genomes]
rs17637637	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34157021	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34368384	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35207649	0.83[AMR][1000 genomes]
rs71427747	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs71427750	0.83[AMR][1000 genomes]
rs7602656	0.87[ASN][1000 genomes]
rs959032	0.95[EUR][1000 genomes]
rs959033	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757886	chr3:116142130-116307542	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv2759171	chr3:116142130-116307542	Weak transcription Active TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:116143400-116161200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr3:116143600-116161000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr3:116144000-116155800	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr3:116144200-116159000	Weak transcription	Brain Angular Gyrus	brain
5	chr3:116144200-116159000	Weak transcription	Brain Hippocampus Middle	brain
6	chr3:116144200-116160400	Weak transcription	Brain Cingulate Gyrus	brain
7	chr3:116144200-116160400	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr3:116152400-116157800	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr3:116152800-116161000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr3:116152800-116161200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr3:116152800-116161400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr3:116153200-116161200	Weak transcription	Colon Smooth Muscle	Colon

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