Variant report

Variant	rs13008892
Chromosome Location	chr2:63806970-63806971
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:63805875..63809160-chr2:63811972..63815997,4	MCF-7	breast:
2	chr2:63805352..63808087-chr2:64066924..64068963,2	K562	blood:
3	chr2:63805352..63808565-chr2:64066924..64068963,3	K562	blood:

Variant related genes	Relation type
ENSG00000169764	Chromatin interaction
ENSG00000014641	Chromatin interaction
ENSG00000143951	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs13025802	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13036222	1.00[ASN][1000 genomes]
rs17552490	0.91[AMR][1000 genomes]
rs17554529	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs34038003	0.91[AMR][1000 genomes]
rs34693434	0.91[AMR][1000 genomes]
rs74181287	0.91[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1800788	chr2:63473443-63900292	ZNF genes & repeats Enhancers Weak transcription Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:63780200-63814800	Weak transcription	Psoas Muscle	Psoas
2	chr2:63789000-63808200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr2:63789000-63808200	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr2:63799200-63808200	Weak transcription	Aorta	Aorta
5	chr2:63799400-63807600	Weak transcription	Adipose Nuclei	Adipose
6	chr2:63801000-63814400	Weak transcription	Primary B cells from cord blood	blood
7	chr2:63803600-63813400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr2:63803800-63808800	Weak transcription	Left Ventricle	heart
9	chr2:63804000-63808200	Weak transcription	Right Atrium	heart
10	chr2:63804400-63807600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr2:63804600-63807400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr2:63805200-63807200	Weak transcription	Fetal Heart	heart
13	chr2:63805600-63808200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr2:63805800-63808400	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr2:63806000-63813600	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr2:63806200-63808200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
17	chr2:63806200-63810600	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr2:63806200-63813600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr2:63806200-63814000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr2:63806400-63813400	Weak transcription	HUES48 Cell Line	embryonic stem cell
21	chr2:63806400-63813400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
22	chr2:63806800-63807000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin

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