Variant report

Variant	rs34693434
Chromosome Location	chr2:63804955-63804956
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs13008892	0.91[AMR][1000 genomes]
rs13025802	0.91[AMR][1000 genomes]
rs13036222	1.00[AFR][1000 genomes]
rs17552490	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34038003	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34692432	1.00[AFR][1000 genomes]
rs35987788	1.00[AFR][1000 genomes]
rs74181287	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1800788	chr2:63473443-63900292	ZNF genes & repeats Enhancers Weak transcription Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:63777400-63806800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr2:63780200-63814800	Weak transcription	Psoas Muscle	Psoas
3	chr2:63789000-63808200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr2:63789000-63808200	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr2:63795000-63805600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr2:63797000-63805400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr2:63799200-63808200	Weak transcription	Aorta	Aorta
8	chr2:63799400-63807600	Weak transcription	Adipose Nuclei	Adipose
9	chr2:63801000-63814400	Weak transcription	Primary B cells from cord blood	blood
10	chr2:63801800-63805600	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr2:63802000-63805600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr2:63802000-63805600	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr2:63802200-63805600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr2:63803600-63813400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr2:63803800-63805200	Enhancers	Fetal Heart	heart
16	chr2:63803800-63808800	Weak transcription	Left Ventricle	heart
17	chr2:63804000-63808200	Weak transcription	Right Atrium	heart
18	chr2:63804200-63806400	Enhancers	iPS-18 Cell Line	embryonic stem cell
19	chr2:63804400-63807600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr2:63804600-63807400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr2:63804800-63805200	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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