Variant report

Variant	rs35987788
Chromosome Location	chr2:64004073-64004074
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs13036222	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs17554529	0.87[AMR][1000 genomes]
rs34038003	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs34693434	1.00[AFR][1000 genomes]
rs74181287	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834242	chr2:63891249-64045617	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1013375	chr2:63969820-64231550	ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Genic enhancers Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:63976400-64028600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr2:63993400-64006600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr2:63994800-64008200	Weak transcription	Adipose Nuclei	Adipose
4	chr2:63998400-64008000	Weak transcription	NHLF	lung
5	chr2:64000600-64006600	Weak transcription	Psoas Muscle	Psoas
6	chr2:64002800-64007600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr2:64004000-64005600	Enhancers	Rectal Mucosa Donor 31	rectum

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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