Variant report

Variant	rs74181287
Chromosome Location	chr2:63844221-63844222
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:63840506..63842686-chr2:63842776..63844510,2	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs13008892	0.91[AMR][1000 genomes]
rs13025802	0.91[AMR][1000 genomes]
rs13036222	1.00[AFR][1000 genomes]
rs17552490	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34038003	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34692432	1.00[AFR][1000 genomes]
rs34693434	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35987788	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1800788	chr2:63473443-63900292	ZNF genes & repeats Enhancers Weak transcription Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	esv1792289	chr2:63812148-63900292	Weak transcription Strong transcription Genic enhancers Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:63840200-63844600	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
2	chr2:63840600-63844400	Enhancers	Placenta Amnion	Placenta Amnion
3	chr2:63840800-63844600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr2:63842000-63844800	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
5	chr2:63842400-63844600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr2:63842800-63845800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr2:63843000-63845800	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr2:63843000-63846800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr2:63843000-63847000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr2:63843400-63847800	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr2:63843600-63844800	Enhancers	H9 Cell Line	embryonic stem cell
12	chr2:63843600-63845200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr2:63843600-63845800	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr2:63843600-63846200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr2:63843800-63844600	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr2:63844000-63844400	Enhancers	HUES48 Cell Line	embryonic stem cell
17	chr2:63844200-63844400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
18	chr2:63844200-63844400	Flanking Active TSS	H1 Cell Line	embryonic stem cell
19	chr2:63844200-63844400	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr2:63844200-63844400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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