Variant report
Variant | rs13015487 |
---|---|
Chromosome Location | chr2:211148632-211148633 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10179268 | 0.82[EUR][1000 genomes] |
rs1155845 | 0.80[EUR][1000 genomes] |
rs11678206 | 0.97[EUR][1000 genomes] |
rs11686587 | 0.97[EUR][1000 genomes] |
rs11688180 | 0.93[EUR][1000 genomes] |
rs11900095 | 0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs12992714 | 0.88[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs13020232 | 0.88[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs13022638 | 1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs13023313 | 0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs13025700 | 1.00[EUR][1000 genomes] |
rs13025911 | 0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs13415601 | 0.82[EUR][1000 genomes] |
rs1509568 | 0.80[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs1509570 | 0.80[EUR][1000 genomes] |
rs1509571 | 0.80[EUR][1000 genomes] |
rs1509572 | 0.80[EUR][1000 genomes] |
rs16844213 | 0.82[EUR][1000 genomes] |
rs2048277 | 0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs2539005 | 0.80[EUR][1000 genomes] |
rs263668 | 0.80[EUR][1000 genomes] |
rs263680 | 0.80[EUR][1000 genomes] |
rs263681 | 0.80[EUR][1000 genomes] |
rs34693593 | 0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs6435561 | 0.97[EUR][1000 genomes] |
rs6716836 | 0.80[EUR][1000 genomes] |
rs6735292 | 0.88[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs6749996 | 0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs6760874 | 0.80[EUR][1000 genomes] |
rs71350737 | 0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs7557043 | 0.97[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | esv1802749 | chr2:210905194-211255611 | Strong transcription ZNF genes & repeats Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 27 gene(s) | inside rSNPs | diseases |
2 | esv1803710 | chr2:211073376-211173763 | Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Active TSS Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
3 | nsv1012567 | chr2:211087588-211315554 | Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 6 gene(s) | inside rSNPs | diseases |
4 | nsv834520 | chr2:211101265-211257068 | Bivalent Enhancer Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
5 | nsv875767 | chr2:211119233-211334647 | Weak transcription Enhancers Genic enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 5 gene(s) | inside rSNPs | diseases |
6 | nsv1014508 | chr2:211142855-211215068 | Enhancers Weak transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
7 | nsv1010916 | chr2:211147730-211205281 | Enhancers Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr2:211147400-211152000 | Weak transcription | H1 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
2 | chr2:211147600-211150000 | Weak transcription | ES-UCSF4 Cell Line | embryonic stem cell |