Variant report

Variant	rs6735292
Chromosome Location	chr2:211161390-211161391
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10179268	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1155845	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11675027	1.00[ASN][1000 genomes]
rs11678206	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11682370	1.00[ASN][1000 genomes]
rs11686587	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11688180	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11688922	1.00[ASN][1000 genomes]
rs11900095	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12989455	1.00[ASN][1000 genomes]
rs12992714	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13002602	1.00[ASN][1000 genomes]
rs13009071	1.00[ASN][1000 genomes]
rs13009890	1.00[ASN][1000 genomes]
rs13011543	1.00[ASN][1000 genomes]
rs13015487	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13017647	1.00[ASN][1000 genomes]
rs13018349	1.00[ASN][1000 genomes]
rs13019613	1.00[ASN][1000 genomes]
rs13020232	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13021055	1.00[ASN][1000 genomes]
rs13022638	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13023313	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13025700	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13025911	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13415601	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1509568	0.80[EUR][1000 genomes]
rs1509570	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1509571	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1509572	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16844213	0.82[EUR][1000 genomes]
rs2048277	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2160020	1.00[ASN][1000 genomes]
rs2539005	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs263668	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs263675	1.00[ASN][1000 genomes]
rs263680	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs263681	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs263686	1.00[ASN][1000 genomes]
rs34334556	1.00[ASN][1000 genomes]
rs34693593	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35125543	1.00[ASN][1000 genomes]
rs36080651	1.00[ASN][1000 genomes]
rs62202972	1.00[ASN][1000 genomes]
rs6435561	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6714161	1.00[ASN][1000 genomes]
rs6716836	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6732072	1.00[ASN][1000 genomes]
rs6732486	1.00[ASN][1000 genomes]
rs6732506	1.00[ASN][1000 genomes]
rs6749996	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6760874	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71350736	1.00[ASN][1000 genomes]
rs71350737	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7557043	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1802749	chr2:210905194-211255611	Strong transcription ZNF genes & repeats Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	esv1803710	chr2:211073376-211173763	Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Active TSS Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1012567	chr2:211087588-211315554	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
4	nsv834520	chr2:211101265-211257068	Bivalent Enhancer Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv875767	chr2:211119233-211334647	Weak transcription Enhancers Genic enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
6	nsv1014508	chr2:211142855-211215068	Enhancers Weak transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv1010916	chr2:211147730-211205281	Enhancers Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:211152600-211163000	Weak transcription	Fetal Muscle Leg	muscle
2	chr2:211152800-211166400	Weak transcription	HSMMtube	muscle
3	chr2:211156600-211163000	Strong transcription	Skeletal Muscle Male	skeletal muscle
4	chr2:211160200-211161600	Genic enhancers	Skeletal Muscle Female	skeletal muscle
5	chr2:211160400-211164600	Weak transcription	Fetal Muscle Trunk	muscle
6	chr2:211161200-211161400	Enhancers	Psoas Muscle	Psoas

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