Variant report
Variant | rs263686 |
---|---|
Chromosome Location | chr2:211050526-211050527 |
allele | C/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10179268 | 0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs10192315 | 1.00[ASN][1000 genomes] |
rs1155845 | 0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs11675027 | 1.00[ASN][1000 genomes] |
rs11678206 | 1.00[ASN][1000 genomes] |
rs11682370 | 1.00[ASN][1000 genomes] |
rs11686587 | 1.00[ASN][1000 genomes] |
rs11688180 | 1.00[ASN][1000 genomes] |
rs11688922 | 1.00[ASN][1000 genomes] |
rs12989455 | 1.00[ASN][1000 genomes] |
rs12992714 | 1.00[ASN][1000 genomes] |
rs13002602 | 1.00[ASN][1000 genomes] |
rs13006132 | 1.00[ASN][1000 genomes] |
rs13009071 | 1.00[ASN][1000 genomes] |
rs13009890 | 1.00[ASN][1000 genomes] |
rs13011543 | 1.00[ASN][1000 genomes] |
rs13015354 | 1.00[ASN][1000 genomes] |
rs13017647 | 1.00[ASN][1000 genomes] |
rs13017752 | 1.00[ASN][1000 genomes] |
rs13018349 | 1.00[ASN][1000 genomes] |
rs13019613 | 1.00[ASN][1000 genomes] |
rs13020232 | 1.00[ASN][1000 genomes] |
rs13021055 | 1.00[ASN][1000 genomes] |
rs13025700 | 1.00[ASN][1000 genomes] |
rs13415601 | 0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs1509568 | 0.95[EUR][1000 genomes] |
rs1509570 | 0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs1509571 | 0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs1509572 | 0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs16844058 | 1.00[ASN][1000 genomes] |
rs16844213 | 0.96[EUR][1000 genomes] |
rs2160020 | 1.00[ASN][1000 genomes] |
rs2539005 | 0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs263668 | 0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs263675 | 0.82[AFR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs263680 | 0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs263681 | 0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs34334556 | 1.00[ASN][1000 genomes] |
rs34678259 | 1.00[ASN][1000 genomes] |
rs35125543 | 0.83[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs36080651 | 1.00[ASN][1000 genomes] |
rs62202972 | 0.81[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs6435561 | 1.00[ASN][1000 genomes] |
rs6714161 | 1.00[ASN][1000 genomes] |
rs6716836 | 0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs6732072 | 1.00[ASN][1000 genomes] |
rs6732486 | 1.00[ASN][1000 genomes] |
rs6732506 | 1.00[ASN][1000 genomes] |
rs6735292 | 1.00[ASN][1000 genomes] |
rs6754591 | 1.00[ASN][1000 genomes] |
rs6760874 | 0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs71350736 | 1.00[ASN][1000 genomes] |
rs7557043 | 1.00[ASN][1000 genomes] |
rs7609345 | 1.00[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv431969 | chr2:210682494-211074494 | Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 25 gene(s) | inside rSNPs | diseases |
2 | esv1795338 | chr2:210758078-211098113 | Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 26 gene(s) | inside rSNPs | diseases |
3 | esv1802749 | chr2:210905194-211255611 | Strong transcription ZNF genes & repeats Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 27 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr2:211043200-211053000 | Weak transcription | ES-WA7 Cell Line | embryonic stem cell |
2 | chr2:211046800-211051800 | Weak transcription | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
3 | chr2:211046800-211059800 | Weak transcription | Pancreas | Pancrea |
4 | chr2:211047400-211053000 | Weak transcription | Thymus | Thymus |
5 | chr2:211050200-211052000 | Weak transcription | Aorta | Aorta |
6 | chr2:211050400-211054200 | Weak transcription | Liver | Liver |