Variant report

Variant	rs6716836
Chromosome Location	chr2:211118337-211118338
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs10179268	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10192315	1.00[ASN][1000 genomes]
rs1155845	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11675027	1.00[ASN][1000 genomes]
rs11678206	1.00[ASN][1000 genomes]
rs11682370	1.00[ASN][1000 genomes]
rs11686587	1.00[ASN][1000 genomes]
rs11688180	1.00[ASN][1000 genomes]
rs11688922	1.00[ASN][1000 genomes]
rs11900095	0.80[EUR][1000 genomes]
rs12989455	1.00[ASN][1000 genomes]
rs12992714	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13002602	1.00[ASN][1000 genomes]
rs13006132	1.00[ASN][1000 genomes]
rs13009071	1.00[ASN][1000 genomes]
rs13009890	1.00[ASN][1000 genomes]
rs13011543	1.00[ASN][1000 genomes]
rs13015354	1.00[ASN][1000 genomes]
rs13015487	0.80[EUR][1000 genomes]
rs13017647	1.00[ASN][1000 genomes]
rs13017752	1.00[ASN][1000 genomes]
rs13018349	1.00[ASN][1000 genomes]
rs13019613	1.00[ASN][1000 genomes]
rs13020232	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13021055	1.00[ASN][1000 genomes]
rs13022638	0.80[EUR][1000 genomes]
rs13023313	0.80[EUR][1000 genomes]
rs13025700	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13415601	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1509568	0.96[EUR][1000 genomes]
rs1509570	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1509571	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1509572	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16844058	1.00[ASN][1000 genomes]
rs16844213	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2048277	0.80[EUR][1000 genomes]
rs2160020	1.00[ASN][1000 genomes]
rs2539005	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs263668	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs263675	1.00[ASN][1000 genomes]
rs263680	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs263681	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs263686	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34334556	1.00[ASN][1000 genomes]
rs34678259	1.00[ASN][1000 genomes]
rs34693593	0.80[EUR][1000 genomes]
rs35125543	1.00[ASN][1000 genomes]
rs36080651	1.00[ASN][1000 genomes]
rs62202972	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6435561	1.00[ASN][1000 genomes]
rs6714161	1.00[ASN][1000 genomes]
rs6732072	1.00[ASN][1000 genomes]
rs6732486	1.00[ASN][1000 genomes]
rs6732506	1.00[ASN][1000 genomes]
rs6735292	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6749996	0.80[EUR][1000 genomes]
rs6754591	1.00[ASN][1000 genomes]
rs6760874	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71350736	1.00[ASN][1000 genomes]
rs71350737	0.80[EUR][1000 genomes]
rs7557043	1.00[ASN][1000 genomes]
rs7609345	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1802749	chr2:210905194-211255611	Strong transcription ZNF genes & repeats Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	esv1803710	chr2:211073376-211173763	Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Active TSS Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1012567	chr2:211087588-211315554	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
4	nsv834520	chr2:211101265-211257068	Bivalent Enhancer Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:211118200-211119000	Enhancers	Fetal Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links