Variant report

Variant	rs13016336
Chromosome Location	chr2:67573514-67573515
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10496153	0.82[ASW][hapmap];1.00[CEU][hapmap];0.85[GIH][hapmap];1.00[TSI][hapmap]
rs1063571	1.00[CEU][hapmap];0.85[GIH][hapmap];1.00[TSI][hapmap]
rs12988210	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12996359	0.86[EUR][1000 genomes]
rs13015319	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13016330	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13018272	0.83[AMR][1000 genomes]
rs13026513	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13030037	1.00[CEU][hapmap]
rs13030211	1.00[CEU][hapmap]
rs13036061	1.00[CEU][hapmap];0.85[GIH][hapmap];1.00[TSI][hapmap]
rs17544516	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17544551	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17545245	1.00[CEU][hapmap]
rs17603914	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2171176	0.86[EUR][1000 genomes]
rs34274370	0.86[EUR][1000 genomes]
rs34281542	0.86[EUR][1000 genomes]
rs34547630	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs34636997	0.86[EUR][1000 genomes]
rs34997300	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35141978	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs35340993	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35570926	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs35593975	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs35607813	0.86[EUR][1000 genomes]
rs35610403	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4428006	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62154898	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62154948	0.86[EUR][1000 genomes]
rs62154949	0.86[EUR][1000 genomes]
rs62154950	0.86[EUR][1000 genomes]
rs62154951	0.86[EUR][1000 genomes]
rs62154952	0.86[EUR][1000 genomes]
rs62158289	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62158290	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6710099	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6725762	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6741192	1.00[ASW][hapmap];0.91[CEU][hapmap]
rs6760857	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008584	chr2:67168244-67703601	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv535775	chr2:67168244-67703601	Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	nsv534389	chr2:67388428-68225338	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
4	nsv834249	chr2:67515471-67691605	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:67563800-67576800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr2:67566400-67576400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr2:67566400-67576800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr2:67567000-67576200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr2:67573400-67574200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr2:67573400-67574800	Enhancers	HMEC	breast
7	chr2:67573400-67575200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr2:67573400-67575200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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