Variant report

Variant	rs62158289
Chromosome Location	chr2:67562021-67562022
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10496153	0.83[AMR][1000 genomes]
rs12988210	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12991090	0.83[AMR][1000 genomes]
rs12996359	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13000557	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs13004747	0.83[AMR][1000 genomes]
rs13004765	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs13015319	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13015349	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs13016330	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13016336	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13018272	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13018894	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs13026513	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13034744	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs13035754	0.83[AMR][1000 genomes]
rs1521051	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs17544516	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17544551	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17603914	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2171176	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34274370	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34281542	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34418651	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs34547630	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34636997	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34920978	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs34962808	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs34997300	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35002490	0.83[AMR][1000 genomes]
rs35141978	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35340993	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs35570926	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35593975	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35607813	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35610403	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35686078	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs4428006	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62154898	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62154948	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62154949	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62154950	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62154951	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62154952	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62156688	0.83[AMR][1000 genomes]
rs62156693	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs62156696	0.83[AMR][1000 genomes]
rs62156698	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs62156756	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs62156757	0.83[AMR][1000 genomes]
rs62158290	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6710099	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6725762	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6741192	0.83[AMR][1000 genomes]
rs6760857	0.95[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs7585807	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008584	chr2:67168244-67703601	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv535775	chr2:67168244-67703601	Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	nsv534389	chr2:67388428-68225338	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
4	nsv834249	chr2:67515471-67691605	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:67551800-67565200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr2:67558400-67563800	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr2:67558600-67565200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr2:67560400-67562400	Active TSS	ES-I3 Cell Line	embryonic stem cell
5	chr2:67561600-67562200	Transcr. at gene 5' and 3'	HUES48 Cell Line	embryonic stem cell
6	chr2:67561600-67562200	Transcr. at gene 5' and 3'	iPS-15b Cell Line	embryonic stem cell
7	chr2:67561600-67562200	Transcr. at gene 5' and 3'	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr2:67561600-67562400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr2:67561600-67562400	Transcr. at gene 5' and 3'	HUES6 Cell Line	embryonic stem cell
10	chr2:67561600-67562600	Transcr. at gene 5' and 3'	H9 Cell Line	embryonic stem cell
11	chr2:67561600-67562600	Transcr. at gene 5' and 3'	HUES64 Cell Line	embryonic stem cell
12	chr2:67561600-67562600	Transcr. at gene 5' and 3'	iPS-18 Cell Line	embryonic stem cell
13	chr2:67561600-67562600	Transcr. at gene 5' and 3'	iPS-20b Cell Line	embryonic stem cell
14	chr2:67561600-67562800	Transcr. at gene 5' and 3'	H1 Cell Line	embryonic stem cell
15	chr2:67561800-67562400	Transcr. at gene 5' and 3'	ES-UCSF4 Cell Line	embryonic stem cell
16	chr2:67562000-67562800	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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