Variant report

Variant	rs62156693
Chromosome Location	chr2:67639583-67639584
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:67632031..67634480-chr2:67638305..67640066,2	K562	blood:
2	chr2:67625062..67626828-chr2:67638770..67641070,2	K562	blood:

Extended variants
information (count: 78 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs10496153	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1063571	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12185591	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12185702	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12991090	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12996359	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13000557	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13004747	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13004765	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13009070	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13015349	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13017696	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13018894	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13026513	0.84[EUR][1000 genomes]
rs13030037	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13030211	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13034744	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13035051	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13035754	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13036061	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1521051	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17545245	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17545301	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17545329	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2171176	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs34103917	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34274370	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs34281542	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs34298852	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34418651	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34493710	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34547630	0.84[EUR][1000 genomes]
rs34636997	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs34737312	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34920978	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34962808	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35002490	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35144434	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35382600	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35503819	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35570926	0.84[EUR][1000 genomes]
rs35607813	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35686078	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35777125	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs36098430	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4428006	0.84[EUR][1000 genomes]
rs62154948	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62154949	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62154950	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62154951	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62154952	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62154955	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62154957	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62154958	0.96[EUR][1000 genomes]
rs62156688	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62156689	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62156692	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62156695	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62156696	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62156698	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62156699	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62156700	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62156702	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62156703	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62156754	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62156756	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62156757	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62156758	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62158289	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs71411986	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs71411987	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs71411988	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7585807	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008584	chr2:67168244-67703601	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv535775	chr2:67168244-67703601	Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	nsv534389	chr2:67388428-68225338	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
4	nsv834249	chr2:67515471-67691605	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	esv3335541	chr2:67577544-67773907	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:92 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:67625400-67639800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr2:67625400-67640000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr2:67625400-67640200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
4	chr2:67625400-67640400	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr2:67625400-67641200	Weak transcription	Fetal Muscle Leg	muscle
6	chr2:67625400-67641400	Weak transcription	HSMMtube	muscle
7	chr2:67625400-67643000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr2:67625600-67639600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr2:67625600-67639600	Weak transcription	Right Ventricle	heart
10	chr2:67625600-67639800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr2:67625600-67641000	Weak transcription	Fetal Brain Male	brain
12	chr2:67627600-67641200	Weak transcription	Primary T cells from cord blood	blood
13	chr2:67628000-67640000	Weak transcription	Rectal Smooth Muscle	rectum
14	chr2:67628000-67641800	Weak transcription	Aorta	Aorta
15	chr2:67628200-67641200	Weak transcription	Colon Smooth Muscle	Colon
16	chr2:67628200-67641400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr2:67628400-67642000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr2:67631000-67640200	Weak transcription	Skeletal Muscle Male	skeletal muscle
19	chr2:67631000-67640600	Weak transcription	NHLF	lung
20	chr2:67631600-67641200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr2:67632000-67640400	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr2:67632200-67639600	Weak transcription	Brain Hippocampus Middle	brain
23	chr2:67632400-67640400	Weak transcription	Primary T cells fromperipheralblood	blood
24	chr2:67633200-67640000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr2:67633200-67640200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
26	chr2:67633200-67640200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr2:67633400-67640400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr2:67633400-67640800	Weak transcription	Hela-S3	cervix
29	chr2:67633400-67641000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr2:67633600-67639800	Weak transcription	HepG2	liver
31	chr2:67633600-67640000	Weak transcription	Primary hematopoietic stem cells	blood
32	chr2:67633600-67640000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
33	chr2:67633600-67640000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
34	chr2:67633600-67640200	Weak transcription	Fetal Thymus	thymus
35	chr2:67633600-67640600	Weak transcription	Fetal Heart	heart
36	chr2:67634800-67640000	Weak transcription	Ovary	ovary
37	chr2:67634800-67640400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr2:67635400-67640400	Weak transcription	Primary T helper cells fromperipheralblood	blood
39	chr2:67637000-67639800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr2:67637200-67639600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr2:67637400-67639600	Strong transcription	Adipose Nuclei	Adipose
42	chr2:67637800-67640200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
43	chr2:67638000-67639600	Weak transcription	HUVEC	blood vessel
44	chr2:67638200-67640000	Strong transcription	Primary B cells from cord blood	blood
45	chr2:67638200-67640400	Weak transcription	H1 Cell Line	embryonic stem cell
46	chr2:67638200-67641800	Weak transcription	NHDF-Ad	bronchial
47	chr2:67638400-67640200	Weak transcription	Primary monocytes fromperipheralblood	blood
48	chr2:67638400-67640400	Weak transcription	Stomach Smooth Muscle	stomach
49	chr2:67638600-67640200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
50	chr2:67638600-67640200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links