Variant report

Variant	rs35382600
Chromosome Location	chr2:67640859-67640860
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:67640053..67642807-chr2:67660180..67662976,2	MCF-7	breast:
2	chr2:67639893..67641689-chr2:67646484..67648117,2	K562	blood:
3	chr2:67639942..67641689-chr2:67646153..67648117,2	K562	blood:
4	chr2:67625062..67626828-chr2:67638770..67641070,2	K562	blood:

Extended variants
information (count: 89 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:84)

rs_ID	r²[population]
rs10496153	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1063571	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12185591	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12185702	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12988210	0.82[AMR][1000 genomes]
rs12991090	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12996359	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13000557	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13004747	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13004765	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13009070	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13015319	0.82[AMR][1000 genomes]
rs13015349	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13016330	0.82[AMR][1000 genomes]
rs13017696	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13018894	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13026513	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13030037	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13030211	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13034744	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13035051	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13035754	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13036061	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1521051	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17544516	0.82[AMR][1000 genomes]
rs17544551	0.82[AMR][1000 genomes]
rs17545245	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17545301	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17545329	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17603914	0.82[AMR][1000 genomes]
rs2171176	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs34103917	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34274370	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs34281542	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs34298852	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34418651	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34493710	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34547630	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs34636997	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs34737312	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34920978	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34962808	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34997300	0.82[AMR][1000 genomes]
rs35002490	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35141978	0.82[AMR][1000 genomes]
rs35144434	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35340993	0.82[AMR][1000 genomes]
rs35503819	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35570926	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs35607813	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs35610403	0.82[AMR][1000 genomes]
rs35686078	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35777125	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs36098430	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4428006	0.85[EUR][1000 genomes]
rs62154898	0.82[AMR][1000 genomes]
rs62154948	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62154949	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62154950	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62154951	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62154952	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62154955	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62154957	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62154958	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62156688	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62156689	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62156692	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62156693	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62156695	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62156696	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62156698	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62156699	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62156700	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62156702	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62156703	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62156754	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62156756	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62156757	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62156758	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62158290	0.82[AMR][1000 genomes]
rs71411986	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs71411987	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs71411988	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7585807	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008584	chr2:67168244-67703601	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv535775	chr2:67168244-67703601	Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	nsv534389	chr2:67388428-68225338	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
4	nsv834249	chr2:67515471-67691605	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	esv3335541	chr2:67577544-67773907	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:67625400-67641200	Weak transcription	Fetal Muscle Leg	muscle
2	chr2:67625400-67641400	Weak transcription	HSMMtube	muscle
3	chr2:67625400-67643000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr2:67625600-67641000	Weak transcription	Fetal Brain Male	brain
5	chr2:67627600-67641200	Weak transcription	Primary T cells from cord blood	blood
6	chr2:67628000-67641800	Weak transcription	Aorta	Aorta
7	chr2:67628200-67641200	Weak transcription	Colon Smooth Muscle	Colon
8	chr2:67628200-67641400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr2:67628400-67642000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr2:67631600-67641200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr2:67633400-67641000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr2:67638200-67641800	Weak transcription	NHDF-Ad	bronchial
13	chr2:67638600-67641800	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr2:67638600-67643200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr2:67638800-67650600	Weak transcription	Fetal Lung	lung
16	chr2:67638800-67651600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
17	chr2:67639000-67641200	Weak transcription	GM12878-XiMat	blood
18	chr2:67639000-67641800	Weak transcription	A549	lung
19	chr2:67639000-67643400	Weak transcription	Left Ventricle	heart
20	chr2:67639200-67641000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr2:67639200-67641000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
22	chr2:67639200-67641000	Weak transcription	Liver	Liver
23	chr2:67639200-67641000	Weak transcription	Dnd41	blood
24	chr2:67639200-67641400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr2:67639200-67643400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr2:67639200-67673600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr2:67639400-67642000	Weak transcription	Osteobl	bone
28	chr2:67639600-67641400	Weak transcription	Adipose Nuclei	Adipose
29	chr2:67639600-67641600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr2:67639800-67641400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr2:67640000-67641200	Weak transcription	Primary B cells from cord blood	blood
32	chr2:67640000-67642800	Weak transcription	Pancreas	Pancrea
33	chr2:67640000-67643000	Weak transcription	HSMM	muscle

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