Variant report

Variant	rs62158290
Chromosome Location	chr2:67563552-67563553
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs1063571	0.82[AMR][1000 genomes]
rs12185591	0.82[AMR][1000 genomes]
rs12185702	0.82[AMR][1000 genomes]
rs12988210	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12996359	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13009070	0.82[AMR][1000 genomes]
rs13015319	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13016330	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13016336	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13017696	0.82[AMR][1000 genomes]
rs13018272	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13026513	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13030037	0.82[AMR][1000 genomes]
rs13030211	0.82[AMR][1000 genomes]
rs13035051	0.82[AMR][1000 genomes]
rs1384743	0.83[AFR][1000 genomes]
rs1384744	0.83[AFR][1000 genomes]
rs17544516	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17544551	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17545245	0.82[AMR][1000 genomes]
rs17545301	0.82[AMR][1000 genomes]
rs17545329	0.82[AMR][1000 genomes]
rs17603029	0.83[AFR][1000 genomes]
rs17603914	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2171176	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34103917	0.82[AMR][1000 genomes]
rs34274370	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34281542	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34493710	0.82[AMR][1000 genomes]
rs34547630	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34636997	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34737312	0.82[AMR][1000 genomes]
rs34997300	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35141978	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35144434	0.82[AMR][1000 genomes]
rs35340993	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35382600	0.82[AMR][1000 genomes]
rs35503819	0.82[AMR][1000 genomes]
rs35570926	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35593975	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35607813	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35610403	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35777125	0.82[AMR][1000 genomes]
rs36098430	0.82[AMR][1000 genomes]
rs4428006	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62154898	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62154948	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62154949	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62154950	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62154951	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62154952	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62154955	0.82[AMR][1000 genomes]
rs62154957	0.82[AMR][1000 genomes]
rs62156538	0.83[AFR][1000 genomes]
rs62156540	0.83[AFR][1000 genomes]
rs62156541	0.83[AFR][1000 genomes]
rs62156689	0.82[AMR][1000 genomes]
rs62156692	0.82[AMR][1000 genomes]
rs62156695	0.82[AMR][1000 genomes]
rs62156699	0.82[AMR][1000 genomes]
rs62156700	0.82[AMR][1000 genomes]
rs62156702	0.82[AMR][1000 genomes]
rs62156703	0.82[AMR][1000 genomes]
rs62156754	0.82[AMR][1000 genomes]
rs62158282	0.83[AFR][1000 genomes]
rs62158289	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6710099	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6725762	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6760857	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008584	chr2:67168244-67703601	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv535775	chr2:67168244-67703601	Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	nsv534389	chr2:67388428-68225338	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
4	nsv834249	chr2:67515471-67691605	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:67551800-67565200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr2:67558400-67563800	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr2:67558600-67565200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr2:67562200-67563600	Active TSS	HUES48 Cell Line	embryonic stem cell
5	chr2:67562400-67563600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr2:67562400-67564200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr2:67562600-67563800	Active TSS	iPS-20b Cell Line	embryonic stem cell
8	chr2:67562600-67564000	Active TSS	H9 Cell Line	embryonic stem cell
9	chr2:67562600-67564200	Genic enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr2:67562600-67565000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr2:67562600-67565200	Genic enhancers	HUES64 Cell Line	embryonic stem cell
12	chr2:67562800-67563600	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr2:67563200-67566400	Strong transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr2:67563400-67563800	Genic enhancers	H1 Cell Line	embryonic stem cell
15	chr2:67563400-67564000	Transcr. at gene 5' and 3'	iPS-15b Cell Line	embryonic stem cell

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