Variant report

Variant	rs13019468
Chromosome Location	chr2:11223962-11223963
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10164900	0.82[AFR][1000 genomes]
rs10182598	0.81[AFR][1000 genomes]
rs10204077	0.86[EUR][1000 genomes]
rs10439232	0.82[AFR][1000 genomes]
rs10495579	1.00[YRI][hapmap]
rs11678376	1.00[YRI][hapmap]
rs11678834	0.86[EUR][1000 genomes]
rs11685699	0.86[EUR][1000 genomes]
rs11686282	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13016104	0.82[AFR][1000 genomes]
rs13032732	0.82[AFR][1000 genomes]
rs13385775	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13385890	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13395933	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13399692	1.00[YRI][hapmap]
rs35790419	0.86[EUR][1000 genomes]
rs71439047	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833392	chr2:11054580-11235239	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv580971	chr2:11175395-11226507	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs13019468	ELAVL4	trans	lymphoblastoid	seeQTL
rs13019468	GAGE2C	trans	lymphoblastoid	seeQTL
rs13019468	GAGE12I	trans	lymphoblastoid	seeQTL

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:11220600-11226200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr2:11220800-11225800	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr2:11221200-11233000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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