Variant report

No.	Distal block	Cell Line	Cell type
1	chr2:11207479..11209731-chr2:11210577..11212814,2	K562	blood:
2	chr2:11162921..11164453-chr2:11209182..11211936,2	MCF-7	breast:
3	chr2:11095672..11098504-chr2:11211086..11213871,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10164900	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10174308	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10185403	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10205830	0.81[EUR][1000 genomes]
rs10221871	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10439232	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10495579	1.00[YRI][hapmap]
rs11675414	0.85[EUR][1000 genomes]
rs11678376	1.00[YRI][hapmap]
rs11686282	0.91[AFR][1000 genomes]
rs12994083	0.83[EUR][1000 genomes]
rs13019468	0.82[AFR][1000 genomes]
rs13021653	0.81[AFR][1000 genomes]
rs13032732	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13385775	0.91[AFR][1000 genomes]
rs13385890	0.91[AFR][1000 genomes]
rs13395933	0.91[AFR][1000 genomes]
rs13399692	1.00[YRI][hapmap]
rs34481886	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs71439044	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs71439047	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833392	chr2:11054580-11235239	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv580971	chr2:11175395-11226507	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:11206400-11213400	Weak transcription	Fetal Lung	lung
2	chr2:11206600-11212800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr2:11207800-11214400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr2:11209200-11213000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr2:11210400-11213800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr2:11211200-11211800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr2:11211200-11211800	Enhancers	Monocytes-CD14+_RO01746	blood
8	chr2:11211200-11212000	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr2:11211200-11213400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr2:11211200-11213600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood

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