Variant report

Variant	rs10439232
Chromosome Location	chr2:11212736-11212737
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:11212005..11213742-chr2:11263802..11265970,2	MCF-7	breast:
2	chr2:11207479..11209731-chr2:11210577..11212814,2	K562	blood:
3	chr2:11212343..11214819-chr2:11221166..11223502,2	MCF-7	breast:
4	chr2:11095672..11098504-chr2:11211086..11213871,2	MCF-7	breast:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10164900	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10174308	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10185403	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10221871	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10495579	1.00[YRI][hapmap]
rs11675414	0.83[EUR][1000 genomes]
rs11678376	1.00[YRI][hapmap]
rs11686282	0.91[AFR][1000 genomes]
rs12994083	0.81[EUR][1000 genomes]
rs13016104	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13019468	0.82[AFR][1000 genomes]
rs13021653	0.81[AFR][1000 genomes]
rs13032732	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13385775	0.91[AFR][1000 genomes]
rs13385890	0.91[AFR][1000 genomes]
rs13395933	0.91[AFR][1000 genomes]
rs13399692	1.00[YRI][hapmap]
rs34481886	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs71439044	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs71439047	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833392	chr2:11054580-11235239	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv580971	chr2:11175395-11226507	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:11206400-11213400	Weak transcription	Fetal Lung	lung
2	chr2:11206600-11212800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr2:11207800-11214400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr2:11209200-11213000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr2:11210400-11213800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr2:11211200-11213400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr2:11211200-11213600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
8	chr2:11211400-11213400	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr2:11211400-11213600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
10	chr2:11211400-11213800	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr2:11211400-11214000	Enhancers	H1 Cell Line	embryonic stem cell
12	chr2:11211400-11214000	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr2:11211600-11214400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr2:11211800-11213200	Weak transcription	Osteobl	bone
15	chr2:11211800-11213800	Weak transcription	Fetal Muscle Leg	muscle
16	chr2:11212000-11212800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr2:11212000-11213400	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
18	chr2:11212000-11213400	Weak transcription	NHLF	lung
19	chr2:11212600-11213600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
20	chr2:11212600-11214000	Enhancers	HUES48 Cell Line	embryonic stem cell
21	chr2:11212600-11214600	Enhancers	Placenta	Placenta
22	chr2:11212600-11214600	Enhancers	HUVEC	blood vessel

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