Variant report

Variant	rs12994083
Chromosome Location	chr2:11169965-11169966
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10174308	0.89[EUR][1000 genomes]
rs10185403	0.88[EUR][1000 genomes]
rs10205830	0.98[EUR][1000 genomes]
rs10221871	0.88[EUR][1000 genomes]
rs10439232	0.81[EUR][1000 genomes]
rs11675414	0.82[EUR][1000 genomes]
rs11679968	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13016104	0.83[EUR][1000 genomes]
rs13032732	0.83[EUR][1000 genomes]
rs34481886	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71439044	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833392	chr2:11054580-11235239	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:11164800-11171200	Weak transcription	Pancreas	Pancrea
2	chr2:11165000-11170000	Weak transcription	Fetal Lung	lung
3	chr2:11168800-11170200	Enhancers	Fetal Brain Male	brain
4	chr2:11169400-11170800	Enhancers	Fetal Brain Female	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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